Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39080 375 / 4e-130 EMB2799 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012806 [exp] 579 / 0 AT2G39080 415 / 8e-146 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038637 [exp] 419 / 4e-148 AT2G39080 402 / 3e-141 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037911 [exp] 207 / 7e-67 AT2G39080 187 / 5e-59 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204700 [exp] 423 / 4e-149 AT2G39080 462 / 3e-164 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033974 pacid=23154837 polypeptide=Lus10033974 locus=Lus10033974.g ID=Lus10033974.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCACCCATTTCTTGGCGCTGCTGTTCTCCACTCCCTCTCCCAAACCGCTCCCTTCACCCACTCCGCTCTCCGCGTCTCACGAGACACCCAT TTCTCAAGTCCCCCTTGCATTTATCCATGGCGTCGTCGCCTCTTCGAGTATCTGCCTCCTCCTCCACCATTGGCGCCGAGGACGATCAAGCGACTCAAAC GACGGCGTCTTCTGGTGCGGTGGGACAGGCTGATCTGCTCATTGTTGGACCGGGAGTGTTGGGTCGCTTAGTGGCTGAGAAATGGCGGCAGGAACACCCT GGTTGTCAAATTGTTGGGCAAACAATGACGGAGGATCATCACGAAGAATTGGTCAAATTGGGGATAAATCCTCATCTGAGAGGGACTCAATCGAGTCAAC GATATCCTTATGTTATCTTCTGTGCTCCTCCTTCTCGAACTGCGGATTACCCTGGCGATGTCAGGGAAGCTACTTCAAGATGGAATGGAGAAGGTTGTTT CTTGTTTACCTCGAGCTCTGCGCCTTACGATTGCCACGACAATGGGGAGTGTAATGAGGACTCTCCAGTTGTGCCAATAGGGAGAAGCCCCAGAACAGAC GTCCTTCTGAAAACAGAGGAAGTAGTTGTGGAAAATAGAGGTGCTCATACTTACTGGTTGGAGAAAGGGACAGTTGACATGCGGCCGGATCACGTACTTA ATCTCATACACTACGAGGATGCTGCTTCGCTCTGTGTAACAATCCTGAAGAAGAAACTCCGTGGCCAAATCTTCCTAGGTTGCGACAACCATCCATTGTC TAGACAAGAAGTTATGGACTTGGTTACTAAAAGCGGAAAATTCAGCAAAAAATTCGAGGGTTTTACTGGAACCAGCGGTCCCCTTGGTAAGAGACTGAAC AACTCGAGAACCCGGAAGGAGCTTTCGTGGGAACCTAAATATCCCAGCTTAGCTCATTTTCTTGGAGTGGCCTCACAATGA
AA sequence Show only first row Show all	>Lus10033974 pacid=23154837 polypeptide=Lus10033974 locus=Lus10033974.g ID=Lus10033974.BGIv1.0 annot-version=v1.0 MAAAPISWRCCSPLPLPNRSLHPLRSPRLTRHPFLKSPLHLSMASSPLRVSASSSTIGAEDDQATQTTASSGAVGQADLLIVGPGVLGRLVAEKWRQEHP GCQIVGQTMTEDHHEELVKLGINPHLRGTQSSQRYPYVIFCAPPSRTADYPGDVREATSRWNGEGCFLFTSSSAPYDCHDNGECNEDSPVVPIGRSPRTD VLLKTEEVVVENRGAHTYWLEKGTVDMRPDHVLNLIHYEDAASLCVTILKKKLRGQIFLGCDNHPLSRQEVMDLVTKSGKFSKKFEGFTGTSGPLGKRLN NSRTRKELSWEPKYPSLAHFLGVASQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10033974 [exp]	0	1
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10020999 [exp]	10.1	0.8271
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	16.4	0.7890
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	21.1	0.7998
AT5G47070			Protein kinase superfamily pro...		Lus10040135 [exp]	27.4	0.7387
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	31.6	0.7781
AT1G78780			pathogenesis-related family pr...		Lus10028620 [exp]	32.5	0.7591
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	33.7	0.7833
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	40.1	0.7661
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10003780 [exp]	48.3	0.7507
AT4G35840			RING/U-box superfamily protein...		Lus10028406 [exp]	53.6	0.7622

Compare expression of checked genes

Lus10033974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.