Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54610 759 / 0 Protein kinase superfamily protein (.1.2.3) AT3G05050 676 / 0 Protein kinase superfamily protein (.1) AT5G50860 648 / 0 Protein kinase superfamily protein (.1) AT1G53050 624 / 0 Protein kinase superfamily protein (.1) AT1G09600 564 / 0 Protein kinase superfamily protein (.1) AT1G74330 562 / 0 Protein kinase superfamily protein (.1.2) AT1G18670 551 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G71530 543 / 0 Protein kinase superfamily protein (.1.2) AT1G57700 533 / 0 Protein kinase superfamily protein (.1) AT1G03740 533 / 0 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012805 [exp] 1089 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 810 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 810 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 641 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 640 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 570 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10015727 [exp] 565 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10028890 [exp] 552 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 550 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204400 [exp] 909 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 838 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 837 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 707 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 700 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 648 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 643 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 605 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 575 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 568 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033975 pacid=23154813 polypeptide=Lus10033975 locus=Lus10033975.g ID=Lus10033975.BGIv1.0 annot-version=v1.0 ATGGGTTGTGTGCTCGGCAAACCGGTGACCCCCAACCGCCCTTCTGCTGGCGTTACCCGAACCCAAGAACAATTTCACCAAACTGAGCTGAGGAATGGCG ACGGTGCTAAAGATTCAGAGGAAGATCCTCAAACATCATCGGCAGCTGCTGCTGCTGCTAGTGTCAGTAAGCCCAAAGGTGAGTGGTCCACCAGAAGGTC TTCCAAGCCTAATCCTCGTCTGAGCAATCCTCCCAAGCATCTCCACGGCGAGCAAGTTGCCGCCGGATGGCCCTCCTGGCTCTCCGCCGTCGCCGGCGAG GCCATCAATGGATGGACCCCTCGCCGCGCTGACACTTTTGAGAAGCTTGATAAGATTGGGCAAGGTACATATAGCAATGTATACAAGGCTAGGGATTCTG TGAGCGGAAAGATTGTGGCTTTGAAGAAGGTTAGGTTTGATAACTTGGAGCCGGAGAGTGTTAGGTTCATGGCGAGGGGGATTTTGATACTGAGGGGATT GAATCATCCCAATGTAGTGAAACTTGACGGCATGGTCACTTCAAGGATGTCTTGCAGTTTGCACCTTGTCTTTGAGTACATGGAGCATGATTTGGCTGGA CTTGCAGCTAGCCCAACGATCACTTTCACTGAGCCTCAGGTTAAATGCTATATGCACCAGTTGTTATCTGGCCTTGAACATTGTCACAACCGCCATGTGC TGCATCGTGATATTAAGGGTTCGAATCTTCTTATTGGCAATGATGGTGTTCTTAGAATTGCTGATTTCGGGTTGGCTTCCTTCTTTGATCCTAATCACAA GCAGCCTATGACGAGTCGGGTGGTTACATTGTGGTATCGCCCCCCTGAGCTTCTTCTAGGAGCCACTGACTATGGTGTTGGTGTTGATCTGTGGAGTGCC GGTTGCATTCTCGCCGAGTTGTTGGCTGGGAAACCGATCATGCCTGGTCGCACTGAGGTGGAACAACTACATAAGATATTTAAACTATGCGGCTCTCCTT CTGAAGACTACTGGAAAAAGTCCAAGCTGCCGCATGCTACCATATTTAAACCTCAACAAGCATACAAGCGATGCATAGCTGAGACATTCAAAGACTTCCC TCCTTCTTCACTGCCGTTGATTGAAACACTTCTCGCTGTTGACCCAGCGGAACGCCAAACTGCTACTGCTGCATTATGCAGTGAATTCTTCACCACTAAG CCATATGCTTGTGATCCATCTAGTCTTCCAAAGTACCCTCCCACAAAGGAGATGGATGCTAAGATACGCGACGAAGAAGCTAGAAGGTTGAGAGCTGCTG GAAAGGCTAATGGTGATGTTGCAAAGAGGTTGCGTCCTCGAGACCGAATCATGAAAGCAATTCCCGCCCCCGAAGCAAATGCTGAGCTTCAAGCCAATCT TGATAGGCGGCGGCTAATAACACATGCAAATGCAAAGAGCAAGAGTGAGAAGTTCCCTCCTCCACACCAAGATGGAGCACTTGGTTACCCACTTGGAACT TCCCATCACATTGATCCCTCATACGACCCGCCAGACGTTCCATTCAGTTCAACAAATTTCTCCTACTCGAAAACTCACGTACAGACATGGTCAGGCCCAT TGGTTGACTTGGGCACAGGCGGCCCATTGGTTGACTTGGGCACAGGCGGTGCTCCGAGGAGAAGGAAGCAGAAGGATAGAAGTTCTGCTCGGGTTAAAGA CAAAGAAATCATGTAA
AA sequence Show only first row Show all	>Lus10033975 pacid=23154813 polypeptide=Lus10033975 locus=Lus10033975.g ID=Lus10033975.BGIv1.0 annot-version=v1.0 MGCVLGKPVTPNRPSAGVTRTQEQFHQTELRNGDGAKDSEEDPQTSSAAAAAASVSKPKGEWSTRRSSKPNPRLSNPPKHLHGEQVAAGWPSWLSAVAGE AINGWTPRRADTFEKLDKIGQGTYSNVYKARDSVSGKIVALKKVRFDNLEPESVRFMARGILILRGLNHPNVVKLDGMVTSRMSCSLHLVFEYMEHDLAG LAASPTITFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGVLRIADFGLASFFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSA GCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWKKSKLPHATIFKPQQAYKRCIAETFKDFPPSSLPLIETLLAVDPAERQTATAALCSEFFTTK PYACDPSSLPKYPPTKEMDAKIRDEEARRLRAAGKANGDVAKRLRPRDRIMKAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGT SHHIDPSYDPPDVPFSSTNFSYSKTHVQTWSGPLVDLGTGGPLVDLGTGGAPRRRKQKDRSSARVKDKEIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	0	1
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	1.0	0.9381
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	3.2	0.9345
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015777 [exp]	4.1	0.9034
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	5.5	0.9239
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	6.6	0.9234
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	6.7	0.9233
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	8.1	0.9146
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	9.2	0.9193
AT5G64950			Mitochondrial transcription te...		Lus10029199 [exp]	9.8	0.8960
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006853 [exp]	13.3	0.9008

Compare expression of checked genes

Lus10033975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.