Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18670 535 / 0 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT3G23920 345 / 2e-112 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 333 / 5e-108 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT5G55700 321 / 1e-103 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G32290 281 / 1e-87 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G00490 279 / 3e-87 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT4G15210 262 / 3e-81 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G45880 257 / 2e-77 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 239 / 1e-70 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012804 [exp] 1028 / 0 AT5G18670 555 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Lus10001087 [exp] 333 / 5e-108 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 330 / 6e-107 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 320 / 1e-102 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 320 / 1e-102 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10016615 [exp] 316 / 9e-102 AT5G55700 734 / 0.0 BETA-AMYLASE 6, beta-amylase 4 (.1.2) Lus10003005 [exp] 308 / 1e-98 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 307 / 5e-98 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10039701 [exp] 287 / 3e-89 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204200 [exp] 627 / 0 AT5G18670 552 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Potri.003G085500 [exp] 339 / 2e-110 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.001G148900 [exp] 337 / 9e-110 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.008G174100 [exp] 337 / 2e-109 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.010G062900 [exp] 334 / 5e-108 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 283 / 3e-88 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 264 / 1e-81 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.003G143500 [exp] 265 / 3e-81 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 263 / 5e-81 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083700 [exp] 249 / 2e-74 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10033976 pacid=23154753 polypeptide=Lus10033976 locus=Lus10033976.g ID=Lus10033976.BGIv1.0 annot-version=v1.0 ATGGAGGTTTCGTTGATCTGCAGTTCTCAGGGCACTTTCTGCGGTGGGGAGTTGGCTCCTTGCAGGGAGCTTAGGCTTTGCCTTCCCACACGAAATGGCG AAGCTCTCTCCTTCTTCGATCGAAGTTCAAGGAGGTGCAGAAATTCCCGTCTTCGGCTTAACATCACCGCCGGCCAAACCAAACTCGTCCGGTCCGACAG CATTCCGGTTCATGATTCTGCTACGAGACCCAATTCCATTGATAGAGTAAGGCTGTTTGTTGGGTTGCCGTTGGATGTGGTCTCTGAATGCAACAGTGTA AACCATTCGAGAGCCATAACAGCAGGGCTTAAAGCTCTGAAATTCCTAGGGATTGAAGGTGTCGAGCTTCCGTTGTGGTGGGGGTTAGTGGAAAAGGTAG GAAAGGGGAGATATGATTGGTCAGGGTACCTTGCAGTTGCAGAGATGGTTCAAAAGGCCGACCTAAAATTACACGTCTCGCTCAATTTCCATGCCAATAA CCATCCCAAGGTCTCACTTCCACAGTGGGTTTCAAAGATTGGTGAATCAAATCCCAGCATCTTTTACCGGGATCGGTCCGGCGATGTTTATAAGGATTGC TTATCTTTGGGTGTGGATGATCTTCCTGTTCTGGATGGAAAGACTCCTCTTCAGGTTTACAAGGATTTTTGTAACAGCTTCAAGTCTTCATTTGCCCACT TCTTGGGCTCTACCGTCACGAGTGTGACAATGGGGCTAGGACCAGACGGTGAGCTGAGATATCCATCTCATCACAAGCTATCTAACAATGGCGAATTTCC AGTTGGGGTTGGAGAGTTCCAATGTTCTGACAAGAACATGATGAACCTCCTGAAGCACCATGCTGAAGCGTACGGATTCCCCTTATGGGGACTCAGAGGC CCTCACGATGCACCGAGTTACAACCAATCCCCCGATTCGAACGGCTTCTTCAAGGAGCTCTCTGGATCGTGGGAATCCCCCTATGGCGATTTCTTCCTTT CGTGGTATTCGAAGCAGTTATTGTCTCACGGGGATCGCATTCTCTCCATGGCCTTTGATGTTTTCAGCAACAGTGGTGTGGCGATTCACGGCAGGGTCCC TCTGTTGCATTCCTGGTACAGAACCCGCTCGAGAGCGTTCGAGAACACGGCTGGATTCTACAACACGGACAGCAAGGACGGGTACGAAGCAGTAGCCGAA ATTTTCGCTAGGAATAGTTGCAGGATGATGCTGCCGGGAATGGACTTGTCGGATGATGAACAGCCGCAGGAGTCGATGTCGAGCCCCGAGATGTTGCTTG CTCAGATTCAAGCTGCCTGCAAGAGGCATGGAGTTGGGGTTTCGGGGATGAACTCGAAACCGGTTTCGAACGGGTTTGATCAGATAAGGAAGAATGTTAT GGGGGAGAAGGATGTGGTTGATTTGTTCAGTTACCAGAGAATGGGAGCTGAGTTCTTCTCGCCGGAGAATTTCCCATCTTTCACTCAGTTTGCTTGGAGC CTGAGTCAGCCGGCTACACATCCGGATGATCTTCCCCAGCAGAAGATGGTTGAGTCTGTACCGTCTACCTCTGAATCAGGCATTGAAATGCAAACAGTGT AG
AA sequence Show only first row Show all	>Lus10033976 pacid=23154753 polypeptide=Lus10033976 locus=Lus10033976.g ID=Lus10033976.BGIv1.0 annot-version=v1.0 MEVSLICSSQGTFCGGELAPCRELRLCLPTRNGEALSFFDRSSRRCRNSRLRLNITAGQTKLVRSDSIPVHDSATRPNSIDRVRLFVGLPLDVVSECNSV NHSRAITAGLKALKFLGIEGVELPLWWGLVEKVGKGRYDWSGYLAVAEMVQKADLKLHVSLNFHANNHPKVSLPQWVSKIGESNPSIFYRDRSGDVYKDC LSLGVDDLPVLDGKTPLQVYKDFCNSFKSSFAHFLGSTVTSVTMGLGPDGELRYPSHHKLSNNGEFPVGVGEFQCSDKNMMNLLKHHAEAYGFPLWGLRG PHDAPSYNQSPDSNGFFKELSGSWESPYGDFFLSWYSKQLLSHGDRILSMAFDVFSNSGVAIHGRVPLLHSWYRTRSRAFENTAGFYNTDSKDGYEAVAE IFARNSCRMMLPGMDLSDDEQPQESMSSPEMLLAQIQAACKRHGVGVSGMNSKPVSNGFDQIRKNVMGEKDVVDLFSYQRMGAEFFSPENFPSFTQFAWS LSQPATHPDDLPQQKMVESVPSTSESGIEMQTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Lus10033976 [exp]	0	1
AT3G12320			unknown protein		Lus10005384 [exp]	4.2	0.6972
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10011424 [exp]	40.2	0.5626
AT3G55580			Regulator of chromosome conden...		Lus10004700 [exp]	42.6	0.5823
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10034461 [exp]	44.2	0.6127
AT5G06980			unknown protein		Lus10026150 [exp]	46.7	0.5768
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10029934 [exp]	55.4	0.5916
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10037167 [exp]	56.6	0.5373
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10034402 [exp]	68.3	0.5790
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10036760 [exp]	74.5	0.5220
AT3G12320			unknown protein		Lus10024129 [exp]	78.4	0.5447

Compare expression of checked genes

Lus10033976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.