Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47900 494 / 6e-175 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT5G18680 395 / 3e-136 TUB AtTLP11 tubby like protein 11 (.1) AT3G06380 384 / 3e-132 TUB ATTLP9 tubby-like protein 9 (.1) AT1G43640 372 / 6e-127 TUB AtTLP5 tubby like protein 5 (.1) AT1G25280 370 / 7e-126 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT2G18280 364 / 5e-124 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G76900 358 / 4e-121 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G47270 343 / 1e-115 TUB AtTLP6 tubby like protein 6 (.1.2) AT1G53320 322 / 8e-108 TUB AtTLP7 tubby like protein 7 (.1) AT1G61940 69 / 6e-13 TUB AtTLP4 tubby like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012803 [exp] 645 / 0 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10028579 [exp] 394 / 3e-135 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10018884 [exp] 389 / 2e-133 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10034106 [exp] 375 / 6e-128 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10029780 [exp] 374 / 3e-127 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10043482 [exp] 372 / 1e-126 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10010645 [exp] 361 / 1e-122 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10033208 [exp] 358 / 1e-121 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10033209 [exp] 357 / 4e-121 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G031000 [exp] 552 / 0 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.008G195200 [exp] 550 / 0 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G192400 [exp] 402 / 1e-138 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.005G192300 [exp] 400 / 7e-138 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 393 / 6e-135 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G121600 [exp] 373 / 3e-127 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.002G034600 [exp] 368 / 3e-125 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G228500 [exp] 367 / 4e-125 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.007G023400 [exp] 367 / 6e-125 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.001G390200 [exp] 337 / 6e-114 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10033977 pacid=23154676 polypeptide=Lus10033977 locus=Lus10033977.g ID=Lus10033977.BGIv1.0 annot-version=v1.0 ATGTCTGCAATTAGGAATCTTATTAGCCGGTCACGGTCGCACCGGGTGGTCCAGGACGCTTCGTCATCATCCTCCGCCGCCGCCGCCGCCTTGCCGGACC GCGGGATGGAGTCCTCCTGCTGGGCGAACATGCCGGAAGAGCTATTGAGGGAAGTGCTGCTCCGAATCGAGTCGTCGGAGACCAGCTGGCCTCCGAGGAA GAGCGTCGTCGCTTGTGCCGGCGTTTGCCGTAGCTGGAGGCACATCACTAAGGATATCGTCAGAGTCACCGAGCTCTCCGCCAAGCTCACCTTTCCAATT TCTCTCAAGCAGCCTGGACCTCGGGATATTCTCCTTCAGTGCTTTATAAAGAGATGCCGAACCTCTCAGACGTATTATCTTTACCTCAGCTTGACCAGTG GATACAGTTATTGTTTCCACGCAGCACTAGCTGATGACGGAAAGTTCCTTCTTGCTGCACGCAAATCCAGACGACCCACCTGCACAGACTATATCATCTC TTTAGATGCTGATGATATGTCAAAGTGTAGCGGTACATATGTTGGAAAACTCAGATCGAATTTTCTTGGGACCAAATTCACAGTCTTTGACGGCCACCCA CCTCATGCTGGGGCCAAGCTGATAAGAAGTCGTTCCACTAAGCCAGTAAGTTTGAAACAAGTTTCGCCAAGAGTGCCTGCTGGCAATTATCCAGTGGCTC ACATCTCCTATGAATTGAACATGCTGGGTTCCAGAGGTCCACGAAGAATGCACTGTACTATGGATGGCATACCTGCCTCTTCTGTTGAACCTGGTGGCAC AGCTCCTACACAGACCGAGTTCTCTCATCGTAAACTTGATGTCTCTCCATCACTCTCGTTACTCCGGTCCGAATCAAACATTCCGAAAGATTCAGTCCCC TCGTCTGATCCGAAGAATGGGGCGTTGGTACTGAAAAACAAGTCTCCAAGGTGGCACGAACATCTGCAGTGTTGGTGCTTGAATTTCCATGGACGAGTGA CGGTTGCGTCAGTGAAAAACTTCCAGCTGGTTGCTTCTGCTGAAAACGGAGTGGCTGGACCCGAACATGAAAAAATAATTCTACAATTCGGGAAAGTTGG AAAGGATTTGTTCACCGTGGATTACCGGTATCCCATATCTGCGTTCCAAGCATTCGCAATTTGTCTCAGTAGCTTCGACACAAAGATAGCTTGCGAGTAA
AA sequence Show only first row Show all	>Lus10033977 pacid=23154676 polypeptide=Lus10033977 locus=Lus10033977.g ID=Lus10033977.BGIv1.0 annot-version=v1.0 MSAIRNLISRSRSHRVVQDASSSSSAAAAALPDRGMESSCWANMPEELLREVLLRIESSETSWPPRKSVVACAGVCRSWRHITKDIVRVTELSAKLTFPI SLKQPGPRDILLQCFIKRCRTSQTYYLYLSLTSGYSYCFHAALADDGKFLLAARKSRRPTCTDYIISLDADDMSKCSGTYVGKLRSNFLGTKFTVFDGHP PHAGAKLIRSRSTKPVSLKQVSPRVPAGNYPVAHISYELNMLGSRGPRRMHCTMDGIPASSVEPGGTAPTQTEFSHRKLDVSPSLSLLRSESNIPKDSVP SSDPKNGALVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVASAENGVAGPEHEKIILQFGKVGKDLFTVDYRYPISAFQAFAICLSSFDTKIACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10033977 [exp]	0	1
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	2.8	0.8509
AT3G14750			unknown protein		Lus10038143 [exp]	3.5	0.8593
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	3.9	0.8237
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	4.5	0.8191
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	9.2	0.8173
AT1G30470			SIT4 phosphatase-associated fa...		Lus10023354 [exp]	17.2	0.8193
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	19.2	0.8073
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	21.4	0.8002
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Lus10010210 [exp]	22.9	0.7760
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	25.7	0.8114

Compare expression of checked genes

Lus10033977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.