Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24830 766 / 0 arginosuccinate synthase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012800 [exp] 953 / 0 AT4G24830 777 / 0.0 arginosuccinate synthase family (.1.2) Lus10013207 [exp] 776 / 0 AT4G24830 724 / 0.0 arginosuccinate synthase family (.1.2) Lus10030725 [exp] 204 / 3e-64 AT4G24830 195 / 4e-61 arginosuccinate synthase family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G239000 [exp] 803 / 0 AT4G24830 754 / 0.0 arginosuccinate synthase family (.1.2) Potri.008G020200 [exp] 802 / 0 AT4G24830 761 / 0.0 arginosuccinate synthase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00764 [flax] [poplar] Arginosuc_synth Arginosuccinate synthase
Representative CDS sequence Show only first row Show all	>Lus10033978 pacid=23154862 polypeptide=Lus10033978 locus=Lus10033978.g ID=Lus10033978.BGIv1.0 annot-version=v1.0 ATGAACCAGTTGAAGGCACTATCTCCGGCCACTTCCGCCAGCCTCATCTCACACGGAGGATTCAGGCGAGGTACCATTCGTCACCTTTTTTCTCTGCAAT TCGGAGTCAGTGCAAGTGAGTTCCATGGCCGCACTCAATATTGCAGAGTTGTCAGGGCTCATAAAACTCCAGTCGTCAAAGCAGTTGCTTCCAGTGATAA AGAAACTGTTACTGCTGGAGCTGCAACTGGCAAGGGGTTGCGTGGTAAACTGAATAAGGTTGTTTTAGCTTACAGTGGTGGCTTAGACACATCAGTCATT GTGCCGTGGTTAAGGGAGAATTATGGCTGTGAGGTTGTCTGCTTTACTGCTGATGTTGGTCAAGGCATCAAAGAACTGGAAGGTTTGGAGCAGAAGGCCA AAGCTAGTGGAGCATGCCAATTAGTTGTGAAGGATTTACAGGAGGAATTTGTGAGGGATTACGTATTCCCATGTCTCCGTGCTGGTGCAATTTATGAAAG GAAATACTTGCTAGGGACTTCAATGGCTCGTCCCGTGATTGCTAAGGCCATGGTCGATGTTGCCAAAGAGGTTGGAGCTGATGCTGTAGCACATGGATGC ACTGGAAAGGGGAATGATCAGGCATGCGTGCGTTTTGAATTGACATTCTTTGCCTTAAACCCTGAGCTGAATGTTGTGGCTCCTTGGAGAGAATGGGATA TTCAAGGACGGGAAGATGCTATTGAGTATGCGAAGAAGCATAATGTACCAGTCCCGGTAACAAAGAAGTCTATATATAGCAGAGATAGGAACCTTTGGCA TTTGAGTCATGAGGGTGATATCTTGGAAGATCCGGCTAATGAGCCTAAAAATGATATGTACATGATGTCAGTAGCCCCAGAGGATGCACCAAACGTACCC GAATATGTTGAAATCGGTATAGTCTCTGGGCTTCCTGTTTCGGTCAATGGGAAGCAATTGTCACCGGCATCCATGGTCGCTGAGCTCAATGAGATTGGTG GCAAACATGGCATCGGTCGTATCGACATGGTCGAAAACCGTCTGGTTGGCATGAAAAGCCGCGGCGTGTACGAAACACCAGGAGGTACTATACTTTTCTC GGCGGTACGTGAGCTGGAGTCTCTGACACTTGACAGGGAGACAATCCAAGTGAAAGACTCACTAGCATTGAAGTACGCGGAGCTGGTTTATGCTGGTAGG TGGTTTGATCCACTTCGTGAATCCATGGACGCATTCATGGAGAAGATCACAGCAACAACCACTGGTTCCGTGACTCTGAAACTTTACAAGGGGTCTGTGT CGGTAGTAGGGAGAACAAGTCTGCATAGTCTGTACAGGGAAGACATTTCGTCGTTTGAGAGCGGAGAGATATATGATCAAGCTGATGCTGCTGGGTTTAT TAGATTGTACGGTCTTCCCATGAGAGTTAGGGCAATGCTTGAAAAGGGTATCTGA
AA sequence Show only first row Show all	>Lus10033978 pacid=23154862 polypeptide=Lus10033978 locus=Lus10033978.g ID=Lus10033978.BGIv1.0 annot-version=v1.0 MNQLKALSPATSASLISHGGFRRGTIRHLFSLQFGVSASEFHGRTQYCRVVRAHKTPVVKAVASSDKETVTAGAATGKGLRGKLNKVVLAYSGGLDTSVI VPWLRENYGCEVVCFTADVGQGIKELEGLEQKAKASGACQLVVKDLQEEFVRDYVFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVAHGC TGKGNDQACVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKNDMYMMSVAPEDAPNVP EYVEIGIVSGLPVSVNGKQLSPASMVAELNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVRELESLTLDRETIQVKDSLALKYAELVYAGR WFDPLRESMDAFMEKITATTTGSVTLKLYKGSVSVVGRTSLHSLYREDISSFESGEIYDQADAAGFIRLYGLPMRVRAMLEKGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24830			arginosuccinate synthase famil...		Lus10033978 [exp]	0	1
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10024942 [exp]	1.4	0.8490
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10024229 [exp]	2.0	0.8304
AT5G26110			Protein kinase superfamily pro...		Lus10006903 [exp]	3.6	0.7851
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10012464 [exp]	4.6	0.8229
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10023599 [exp]	5.5	0.8135
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10031002 [exp]	11.4	0.8135
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	14.3	0.8155
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10023825 [exp]	14.5	0.7972
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10035401 [exp]	15.0	0.7951
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	15.0	0.7797

Compare expression of checked genes

Lus10033978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.