Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18700 504 / 2e-162 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT1G33940 221 / 5e-64 unknown protein AT1G50240 174 / 7e-45 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT2G45490 161 / 2e-44 ATAUR3 ataurora3 (.1) AT3G08720 163 / 2e-43 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 162 / 6e-43 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT1G45160 162 / 3e-41 Protein kinase superfamily protein (.1.2) AT3G61960 158 / 6e-41 Protein kinase superfamily protein (.1.2) AT3G06030 153 / 5e-39 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G48490 154 / 2e-38 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012799 [exp] 734 / 0 AT5G18700 960 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10039167 [exp] 167 / 4e-43 AT1G50240 952 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10013766 [exp] 168 / 7e-43 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10005470 [exp] 166 / 2e-42 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020580 [exp] 151 / 7e-41 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10033518 [exp] 150 / 3e-40 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10030182 [exp] 156 / 6e-40 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025213 [exp] 156 / 2e-39 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10005135 [exp] 155 / 2e-39 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G195800 [exp] 547 / 5e-179 AT5G18700 1833 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.010G031800 [exp] 528 / 2e-171 AT5G18700 1791 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.016G138400 [exp] 164 / 8e-44 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.019G052500 [exp] 169 / 3e-43 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Potri.002G263000 [exp] 167 / 1e-42 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G109600 [exp] 159 / 6e-42 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G080500 [exp] 153 / 1e-41 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.002G181000 [exp] 157 / 6e-40 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G107000 [exp] 155 / 2e-39 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G129200 [exp] 154 / 2e-38 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033979 pacid=23154783 polypeptide=Lus10033979 locus=Lus10033979.g ID=Lus10033979.BGIv1.0 annot-version=v1.0 ATGAATCGTTTCCACGTCTATGAAGCTATTGGCCGCGGAAAATGCTCAACTGTGTATAAAGGGAGGAAGAAGAAGACCATCGAGTACTATGCGATTAAGA GCGTTGATAAGTCGCAGAAGAGGAAGGTTCTTCACGAAGTTAAGATTCTCCACTCTCTGGATCATCCAAACGTGTTGAAGTTTTACTCCTGGTACGAGAC ATCGGCTCATCTGTGGTTAGTTTTGGAGTATTGTGTTGGAGGGGACCTCAGGACATTATTACAGCAGGATGGTCAGCTGCCTGAAGAGTCAATTCTTGAT TTTGCAACTGACCTAGTGACAGCCTTGCAGTATTTACACTCGAAGGGAATCCTCTATTGTGATTTAAAACCATCTAATATCCTTTTAGATGAAAATGGAC ACTTGAAGCTATGTGATTTTGGATTGGCAAACAAGTTGAGTGATATATCTAAAACATACTCTGCGTCAACAGAAGCAAAATGTGGAACGCCCTGTTATAT GGCTCCCGAACTGTTTGAGGATGCAGGAATTCATTCATATGCTTCTGATTTCTGGGCCCTGGGTTGTGTACTGTATGAGTGCTATACAGGGAGACCTCCT TTTGTGGGAAGAGAATTCACCCAGCTAGTGAACTCCATCGTCTCAGATCCAACTCCAGCACTACCTGGCATTCCAAGCAGACCCTTTGCGAACTTAATCA ACTCTCTATTGGTCAAGGATCCCGCCGAGCGAATTCAGTGGAATGAGCTCCGTGAACATGCGTTTTGGAGAAGCAAATTTCCTCTAGTATCATTACCGCC AGAACCTGCTTTTGATAAAATGATTGAGTATTCTGCTAGGCCATGCCTGTCAGAACGTAATGCAGACAAGTCTCTACAGAACAAAACCCCTACAAAAGGC CGTGAAAGAGATACCAAAGTAACTCCAAGAAAAGATGAGAATTCGCAGTCAGGATTAAGGGGTGAGTTGCTGTTTTACATAGCCACCCAGAATGATCAAT CTAAGGACAACAATCCATCAGAATCTCCTGCAAAAGACGGGAGATCAGTTCCTGGCTGGCAGGGAAGAGATGACTTCCAAATTACGCTTCTTCAAGTTCT GGAGTCTGTTGCTGAGGAGTCCCAGCTGATTCTCGCAAACCCTCAAATCTTCACCACAGCAATTCTCCCCAGCCTGGCAACTCTCTACAAGGGCAACAAA GACGATCATGCCAGATTCTTGTGCCTGAAGATTCTATTTCATGTGATGGTAATCTTCTTAAATGAACCATTCGAGGATGAGCAACGATCTGAAGCGTTAA AGTCCATAGCCAATGTTCATTTCCTACCGCTCTACCCCATGCTGGTCGAAGATGAAGACCCTATTCCAATTTTCTCTCAGAAGCTTCTTGTCATGCTCAT TGACTTCAACTACATAAAAATTTCAGACATACTACATCTGAAGAAGACAGTTTCTCAGTGCTTCGAGTTCTTGCTTGGCGATCTATCCAATGCAAATGTC AGCAACGTCAAGCTGTGTCTGGCCCTGGCATCTGCTCCTGAAATGGAGTCCAAGCTACTTTCCCAGCTCAAAGTAGTTCGCAGGATTGGCAATCTCCTGG AGTTCGTGTATGCAAAAGAGATGGAAGATTTCCTGGAACCAACTCTTGGCCTCTGTAAAGCTTTCCTTCTCCGTTCATTTAGCAGGGAAAAAGGATTGAA TTTCAGACAAGACCCATCACTCTTGACCGGAAGTTCGTCTGAAGTTGATGGCTGCGTGGAAGGAATAAGAGACGTTGCAGATTTCGGGAGCAACGTTGGT CTGTTGTTGCAACTCAGTGGTTCTTCGGAAGCAAATTTATCAGAGATATCTTCTGAATGTGTAGTATTACTACTGAAGGCAGCTCCCAGGGAAGCCACCG CTAGTTTTCTAACTAACCTTCCAAAAGTCGGTGCCATACTTGAGCCATGGCGCAGTGGCGCCCAGCACTTGGTTTTACTGCGGATGCTGCATGCCCTCTG CTACTCTTGTCGACAGTACCGATCGCATTCGATGATTTTGTCCATTTCCATGGCTGAGATTTCAAAGGTGCAAGTGCTAGTCGTGGAGCTGAAAAGTTCA GCAGTAGCTGAGCTATCGAATGCCGCTTCGCTAGTTGCGTCAGAGTTGCAGCGGCTGCCTCGCCACCATTAA
AA sequence Show only first row Show all	>Lus10033979 pacid=23154783 polypeptide=Lus10033979 locus=Lus10033979.g ID=Lus10033979.BGIv1.0 annot-version=v1.0 MNRFHVYEAIGRGKCSTVYKGRKKKTIEYYAIKSVDKSQKRKVLHEVKILHSLDHPNVLKFYSWYETSAHLWLVLEYCVGGDLRTLLQQDGQLPEESILD FATDLVTALQYLHSKGILYCDLKPSNILLDENGHLKLCDFGLANKLSDISKTYSASTEAKCGTPCYMAPELFEDAGIHSYASDFWALGCVLYECYTGRPP FVGREFTQLVNSIVSDPTPALPGIPSRPFANLINSLLVKDPAERIQWNELREHAFWRSKFPLVSLPPEPAFDKMIEYSARPCLSERNADKSLQNKTPTKG RERDTKVTPRKDENSQSGLRGELLFYIATQNDQSKDNNPSESPAKDGRSVPGWQGRDDFQITLLQVLESVAEESQLILANPQIFTTAILPSLATLYKGNK DDHARFLCLKILFHVMVIFLNEPFEDEQRSEALKSIANVHFLPLYPMLVEDEDPIPIFSQKLLVMLIDFNYIKISDILHLKKTVSQCFEFLLGDLSNANV SNVKLCLALASAPEMESKLLSQLKVVRRIGNLLEFVYAKEMEDFLEPTLGLCKAFLLRSFSREKGLNFRQDPSLLTGSSSEVDGCVEGIRDVADFGSNVG LLLQLSGSSEANLSEISSECVVLLLKAAPREATASFLTNLPKVGAILEPWRSGAQHLVLLRMLHALCYSCRQYRSHSMILSISMAEISKVQVLVVELKSS AVAELSNAASLVASELQRLPRHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	0	1
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	1.0	0.9882
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	1.7	0.9713
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	2.0	0.9823
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	4.0	0.9625
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10007725 [exp]	5.5	0.9680
AT5G04885			Glycosyl hydrolase family prot...		Lus10033393 [exp]	5.5	0.9596
AT1G04030			unknown protein		Lus10008231 [exp]	5.7	0.9596
AT1G04030			unknown protein		Lus10003613 [exp]	6.0	0.9565
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	6.2	0.9562
AT1G63640			P-loop nucleoside triphosphate...		Lus10002007 [exp]	8.1	0.9539

Compare expression of checked genes

Lus10033979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.