Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06350 718 / 0 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012797 [exp] 971 / 0 AT3G06350 748 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10001725 [exp] 390 / 1e-129 AT3G06350 315 / 9e-100 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10004130 [exp] 360 / 3e-118 AT3G06350 398 / 3e-132 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10040908 [exp] 275 / 2e-86 AT3G06350 291 / 2e-92 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10005928 [exp] 162 / 2e-45 AT3G06350 180 / 9e-52 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G019000 [exp] 790 / 0 AT3G06350 736 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029800 [exp] 689 / 0 AT3G06350 630 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029900 [exp] 495 / 1e-171 AT3G06350 516 / 4e-179 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.005G043400 [exp] 483 / 6e-167 AT3G06350 508 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.014G135500 [exp] 434 / 1e-147 AT3G06350 444 / 8e-151 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.008G196100 [exp] 345 / 6e-117 AT3G06350 326 / 1e-108 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.017G103401 [exp] 64 / 3e-13 AT3G06350 59 / 2e-12 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF08501 [flax] [poplar] Shikimate_dh_N Shikimate dehydrogenase substrate binding domain CL0036 [flax] [poplar] TIM_barrel PF01487 [flax] [poplar] DHquinase_I Type I 3-dehydroquinase CL0063 [flax] [poplar] NADP_Rossmann PF01488 [flax] [poplar] Shikimate_DH Shikimate / quinate 5-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10033981 pacid=23154671 polypeptide=Lus10033981 locus=Lus10033981.g ID=Lus10033981.BGIv1.0 annot-version=v1.0 ATGGACTCCGGCAATGTCATGCTGACCTCAAGCTCTTCTGCAATGGGCGGCGGAACTGGACTTCCCCTCAACAATCCGACCCTAATCTGTGTTCCAATCA TGGCGGATTCCATAGATGACATGCTCGTTAAAGCTTCCCAAGCCAAGACCGCCGGTGCTGATCTCGTGGAAATTCGATTGGATAGCTTGACTAACTTCGT TCACCCTCGCCAGGATCTCACCACGCTCATTAATGGCTCTCCCTTGCCCACTCTCTGTACCTACAGGCCGAGGTGGGAAGGAGGCCAGTACGACGGTGAT GAAAGCGAGCGTTTGGATGTTCTTAAGTTAGCTATGGAATTGGGAGCTGATTACATTGACGTTGAGCTTCAGGTTGCTGGTGATTTCATTGAATCCTTAC ATGGAAACAGACCTCCAAAGTGCAAAGTCATTGTTTCTTCTCATAACTACGAAAATACGCCATCCGTTGAGGACCTTGGTAACTTGGTGGCAAGAATACA ATCGGCGGGAGCTGACATTGTGAAGATTGCTACAACAGCCTTGGATATTACTGACAACGCAAGGATGTTTCGAATAACAGTTCATTCTCAAGTTCCAATA ATAGGACTTGTTATGGGAGAGAGGGGTTTGATGTCAAGGGTGCTTTGTGGCAAATTTGGGGGATATCTCACCTTTGGAACTTTGGAGTCTGGAGTGGTCT CGGCTCCTGGGCAGCCGTTGATCAAAGACCTGCTGGATCTATACAATTTCAGACAAATCCAAGCTGATACCAAGGTTTTCGGCATAATAGGGAAGCCAGT TGGCCACAGCAAATCACCTGTTCTGTACAATGAAGCATACAGATCAGTTGGTTTTAATGGGGTATATGTGCACTTATTAGTTGATGACCTGGCAAGTTTT CTCAAGACTTACTCATCTCCGGATTTTGCAGGATTCAGTTGTACGATTCCTCACAAAGAGGCTGCTGTGAAGTGTTGCGATGAAGTTGATCCAGTTGCAA AGTCGATAGGTGCTGTTAATTGCATTGTAAGGAGAGAAAGTGATGGGAAGTTATTTGGTTTCAATACAGACTATGTTGGTGCAATTTCTGCAATTGAGGA TGGACTTCAAGCTTCACGAAATGGTAGCAGTCAATCTGGTTCACCCTTAGCTGGAAAGGCGTTTGTGGTCATTGGCGCTGGAGGTGCTGGTAAAGCACTA GCTTATGGTGCAAAAGAAAAGGGAGCAAAGGTCATCATTGCCAATCGTACCTACGGTAGAGCAAAGGAGCTTGCTGACATGATTGGAGGAGAAGCCATCT CTCTAGCTGATCTAGAGAATTTCCATCCAGAAAGTGGCATGATTCTTGCGAACACAACATCAATTGGAATGGAGCCGAAAGTTGATGAAACACCCGTCCC CAAGCGTGCATTGAGACATTATGCCCTGGTATTCGATGCCGTTTACACCCCGAAAATTACCAGGATGCTGAGAGAAGCTGAGGAGTGGGGAGCCACTGTA GTGTCGGGACTGGAGATGTTCATTGGGCAAGCGTACCAGCAGTTTGAGAGGTTCACTGGATTACAGGCTCCCAAGGAACTCTTCCGCAAGACCATGTCCA AGTAA
AA sequence Show only first row Show all	>Lus10033981 pacid=23154671 polypeptide=Lus10033981 locus=Lus10033981.g ID=Lus10033981.BGIv1.0 annot-version=v1.0 MDSGNVMLTSSSSAMGGGTGLPLNNPTLICVPIMADSIDDMLVKASQAKTAGADLVEIRLDSLTNFVHPRQDLTTLINGSPLPTLCTYRPRWEGGQYDGD ESERLDVLKLAMELGADYIDVELQVAGDFIESLHGNRPPKCKVIVSSHNYENTPSVEDLGNLVARIQSAGADIVKIATTALDITDNARMFRITVHSQVPI IGLVMGERGLMSRVLCGKFGGYLTFGTLESGVVSAPGQPLIKDLLDLYNFRQIQADTKVFGIIGKPVGHSKSPVLYNEAYRSVGFNGVYVHLLVDDLASF LKTYSSPDFAGFSCTIPHKEAAVKCCDEVDPVAKSIGAVNCIVRRESDGKLFGFNTDYVGAISAIEDGLQASRNGSSQSGSPLAGKAFVVIGAGGAGKAL AYGAKEKGAKVIIANRTYGRAKELADMIGGEAISLADLENFHPESGMILANTTSIGMEPKVDETPVPKRALRHYALVFDAVYTPKITRMLREAEEWGATV VSGLEMFIGQAYQQFERFTGLQAPKELFRKTMSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	0	1
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	2.4	0.8564
AT3G23090			TPX2 (targeting protein for Xk...		Lus10021223 [exp]	2.8	0.8640
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034472 [exp]	3.5	0.8293
AT5G26780		SHM2	serine hydroxymethyltransferas...		Lus10028218 [exp]	4.7	0.8842
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	6.3	0.8413
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	6.9	0.8460
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	7.2	0.8511
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	7.7	0.8381
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10022038 [exp]	7.9	0.7805
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10022577 [exp]	8.8	0.8340

Compare expression of checked genes

Lus10033981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.