Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36980 553 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 318 / 6e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 311 / 1e-97 MEF22 mitochondrial editing factor 22 (.1) AT2G33680 302 / 9e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 305 / 1e-93 unknown protein AT2G35030 297 / 7e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 305 / 2e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 298 / 1e-91 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 296 / 8e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 295 / 8e-91 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012796 [exp] 816 / 0 AT2G36980 516 / 1e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 328 / 4e-103 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 320 / 1e-96 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10022890 [exp] 311 / 3e-96 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 300 / 3e-93 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 309 / 1e-92 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10024936 [exp] 301 / 2e-92 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 295 / 3e-91 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 295 / 2e-90 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G020500 [exp] 682 / 0 AT2G36980 725 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 325 / 1e-104 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 329 / 3e-103 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 328 / 3e-103 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 329 / 4e-103 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 324 / 3e-101 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G038400 [exp] 319 / 5e-101 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 316 / 1e-98 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 309 / 4e-97 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 310 / 2e-96 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033982 pacid=23154750 polypeptide=Lus10033982 locus=Lus10033982.g ID=Lus10033982.BGIv1.0 annot-version=v1.0 ATGCACTCAAACTTATTCCATATCACCTCCAAGATCACTTACCTCGCTCGTTCCGGCTTCCTCTCCCAAGCACGCAAACTGTTCGATGAAATGCCAATCA GAGACACCATTGCTTGGAATTCGATGCTCACCAGCTACTCCCGCCTGGGTCTTCACCGAGAAGCCCTTTCTCTCTTTCACCATCACATGAGGCTCAGCGA CTCCACACCCGATGCTTTCACTTTCACCGCAACTCTCAACGCCTGCGCCGGTCTAGTTTCCCACCGCGCCGGTACCAGACTCCACGCTCTGGTTATTGTT CTTGGCTGCCATTCTTCGCTTCCGGTCAACAACTCTCTTCTGGATATGTACGGTAAGTGTTTCGACCCTGTCAGCGCCAGTAACGTCTTTAAGGAAATGA ATTTCGCCAATGAAGTTACGTGGTGTTCGCTCTTATTCGCTCATATCAATTCCGGTCTGCTTCATGAAGCTAGTGAATTCTTCCGATTGATGCCTAGGAG GATTGATGTTGCCTGGAATATAATGATATCTGGATTTGGCCAGTGTGGTGAAATTGAGTTTTGCTTGGATCTCTTAAGACAAATGATGGATGACGCAGTG AAGGTGTTCCAATCATCTGGAATGCTAACTCAGGTGTCTTGGAATGCTATAATCGATGCTTACATGAAATCCGGAGACACTGAAAAAGCATTCTTTGAGT TCCAGCAAATGCCTGAAAAGAATGTAGTCTCGTGGACGTCCATGATCTCAGGGTATGCACGGAAAGGTTACGGCGAAGAAGCTTTGAATTTGTTCAGTTA TATGATGATATCCGGTCTGCTTCCGGATGATTTCACTCTAGGAGCGGCCCTTCACGCTTGTTCCACCATGGCATCGATGGTCCATGGTAGGATGGTCCAT GGATGCGTAGTTTACTCCGGTTTCCATACCTATGCTTATGTCGGCAATGGGCTAGTCGATATGTACGCAAAGTGTGGTGATTTAGATGGTTCAGTGATGG CATTTGATGATATCGGCCACAACAAGAACGTAGTATCTCTCAACACTATGATATTCGCGTTGGGCTTACACGGGAAAGGAAACCGAGCTCTACAACTGTA TGAAGATACGATAGAATCAGGGAGGATAAAACCAGATAAAGTGACGTTCGTTGGCTTGTTAATGACTTGTAGTCATACTGGCCTGGTCGAAAAAGGTCGA ATGTTGTTCGAGTCGATGAGCTCGGATCACGGAGTTTCCCACGAGGTGGATCACGTAGCGTGTATGGTGGATCTGCTTGGCCGAGCTGGATACTTATCGG AAGCAGAAGAATTGGCTAGGAAATATAAGGAAGCAGTAGGGTTTAGTAGAGAAGCTTTACTTGGAGCATGTTCCAGACACGGTGAAGTGGGAATGGGGAG TTGTTTAGGGGAGGAATTGAAGTTGTTGGAGCCTCGTAAAGAAACAAGCTACGTACTGCAATCCAATATGTATAGTGCAAGTGGGCGATGGGAAGAAGCT GAGTTGGTTAGGAAGGCTATGGTGAAGGAAGGGTTGAAGAAGCCGCCTGGTTGTAGTTGGATTGAAGTGAGGGATAAAGTTTCTTGTTTTGTTGCAGGAA GGTGCAGTAGTAGTACTGTATATCATCCCTGTAAGGAAGAGATGCAAAACGCTCTACATTCCCTTGAATATGAGATGAGAAACTTGTGGATTTGGTCGAA AATTTCGATTTGA
AA sequence Show only first row Show all	>Lus10033982 pacid=23154750 polypeptide=Lus10033982 locus=Lus10033982.g ID=Lus10033982.BGIv1.0 annot-version=v1.0 MHSNLFHITSKITYLARSGFLSQARKLFDEMPIRDTIAWNSMLTSYSRLGLHREALSLFHHHMRLSDSTPDAFTFTATLNACAGLVSHRAGTRLHALVIV LGCHSSLPVNNSLLDMYGKCFDPVSASNVFKEMNFANEVTWCSLLFAHINSGLLHEASEFFRLMPRRIDVAWNIMISGFGQCGEIEFCLDLLRQMMDDAV KVFQSSGMLTQVSWNAIIDAYMKSGDTEKAFFEFQQMPEKNVVSWTSMISGYARKGYGEEALNLFSYMMISGLLPDDFTLGAALHACSTMASMVHGRMVH GCVVYSGFHTYAYVGNGLVDMYAKCGDLDGSVMAFDDIGHNKNVVSLNTMIFALGLHGKGNRALQLYEDTIESGRIKPDKVTFVGLLMTCSHTGLVEKGR MLFESMSSDHGVSHEVDHVACMVDLLGRAGYLSEAEELARKYKEAVGFSREALLGACSRHGEVGMGSCLGEELKLLEPRKETSYVLQSNMYSASGRWEEA ELVRKAMVKEGLKKPPGCSWIEVRDKVSCFVAGRCSSSTVYHPCKEEMQNALHSLEYEMRNLWIWSKISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10033982 [exp]	0	1
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	1.4	0.9303
AT5G27110			Tetratricopeptide repeat (TPR)...		Lus10009702 [exp]	13.3	0.8159
AT3G51010			unknown protein		Lus10042347 [exp]	14.3	0.8901
AT1G79220			Mitochondrial transcription te...		Lus10031184 [exp]	16.1	0.8761
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031688 [exp]	18.2	0.8441
AT5G25500			unknown protein		Lus10002897 [exp]	18.3	0.8758
AT5G20600			unknown protein		Lus10027609 [exp]	18.8	0.8927
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10026465 [exp]	19.9	0.8539
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	22.0	0.8468
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	25.0	0.8924

Compare expression of checked genes

Lus10033982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.