Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18750 548 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G06340 412 / 2e-131 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT3G04980 319 / 1e-92 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 306 / 3e-91 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18730 204 / 2e-56 unknown protein AT5G18740 201 / 2e-56 Domain of unknown function (DUF3444) (.1) AT3G04960 197 / 2e-54 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT5G27240 203 / 1e-53 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 165 / 4e-42 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 165 / 4e-42 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012795 [exp] 948 / 0 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 418 / 1e-129 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 408 / 5e-126 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10018975 [exp] 239 / 6e-66 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 211 / 2e-56 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 207 / 1e-54 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10042540 [exp] 197 / 8e-52 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 184 / 2e-48 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 179 / 8e-47 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G018800 [exp] 784 / 0 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 467 / 2e-147 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 464 / 2e-146 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 314 / 8e-99 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.012G001100 [exp] 187 / 5e-49 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 181 / 3e-47 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 177 / 7e-46 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 173 / 2e-44 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 172 / 2e-44 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196301 [exp] 155 / 2e-43 AT5G18730 158 / 1e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10033983 pacid=23154810 polypeptide=Lus10033983 locus=Lus10033983.g ID=Lus10033983.BGIv1.0 annot-version=v1.0 ATGGAGTGCAATAAAGAAGAGGCTGTTAGGGCCAAAAGTTTAGCCGAGACTAAGATGCAAAACAAAGATTTTGCAGGGGCTCGCAAAATGGCAATCAAGG CTCAAAAACTCTATAATGAATTGGATAAGATCTCTCATATTTTGATTATATGCGATGTACATTGTGCCGCTGAGCTGAAAGTATCGGGAACAGAGATGGA CTGGTATGGTATCCTTCAAATTGAAAGGACAGCTGATGAGATCACCATCAAGAAGCAGTACAGGAAGTTTGCTCTCTTACTTCATCCTGACAAAAACAAC TTCCCTGGTGCAGAATCAGCCTTTAAGTTGATTGGAGAAGCACAAAGAGTGCTCTTAGATAAAGGAAAAAGGTCATTGCATGACATGAAACGTTCAGTGA GCAGGCCTGCACAGGGCTCAACCTACAGCTCAACTTCTGGGGCTCAGAATGGTTTTAATGGATTTAATGGCTGTGTTGGTGGGTCCAATTTTCAACACCA AAGGCCGCAACAGCCAGCAACTCAACCAGGGTCTGTTAATAGTCGCCGGACTTTCTGGACTGACTGTCCCTTTTGTCAATCAAGGTACCAGTATTATGTT GAAATCATTAATAGGTCTGTTGTGTGTCAGCATTGTCATAAACCTTTTATAGCACATGAAAAGAGTGCACAGGGGATGCCAACGGTTAAAAAATTCAGTC AGCCAGTGTTTCACCCTCGGAACGATGCCCCTCAAGGTGCTGTTAAAGTGGATGTTGGATCGCAGAGAAATGCAAGTAAAGGGCATTCGAAAGTAGAATC TCAAAAGAAACAAGGTACTGTTAAAGTGGAAGTTGGATTGCAGGGAAATTCTAGTAAAGGGCATTCGAAAGTGGAATCTCAAAAGAAACCTTCTGATAGC ATGGCTGCTCCTGCAAATTCAAGTCGAAAGAGAAGCTGGAAAAAAGAAGATGATTTCATTGTAAGCTCAGATTCTGAAAGTAGCAGTAGCGACGAAGATG AAGAACCTATGATGCCGGATGTTGGTGATTTGGCAAGTTATAAGGAGCGTCCAAGGCGGTCTGTTAGGAGTAAACAGAAGGTTTCTTACCAAGAAAATAA AAGTGACGATGAAGAATCGAGGACCCCCCAGAAAAAAGCTAAGGAGAATGGGCCTACTGAGGAGAGTATGCATTCGTCTGTGGATGCTGTTGCTAGAGGC AAGAATAAGTTGAATACAGAGGACTTGAATGAAGATGACGAAACCAGGAATGTGAAGGAAAAAGAGGAGATGAATAAGAATGGCAGTATGAGAAGCTTCG AGAATGATTCTGATTCTGATGCTGACCAGGAAATGGAATCTGTGCCTTATATTTGTCCTGATCCTGAATTTAATGACTTCGACAAGAAACGTGATGTGAA GTTATTTCAAGCTGGAAACATTTGGGCTATTTACGATGAATTCAGTGGCATGCCCAGGTTTTATGCTCGAATCAATAGAGTGTTTTCTGGTGGCTTGAAG TTCAGGATAACTTGGCTGGAAGCAGATCCGAATTCTGATGATGAACAGAAATGGGCGTCTGCTGGTTTACCAGTCTCCTGTGGTAAGTTCAAGCTTGGGT CATCTACAGATGTTGAAGACCTCAATTTGTTTTCACACCAAGCTGAATGGGAGAAAGGGAACCGGTGTGATGCATACGAGATAGTTCCAAGAAAGGGAGA AATTTGGGCTCTGTTCAAGACTTGGGATATCAATTGGAAATCTCAGACTGACCACACTAAGCGAGATTTGGAGTATGATTTTGTTGAAATCTTGTCCAAC TTCAGTGAAAATAAGGGTGTCTCTGTGTTGTACCTGGGAAAGTTGAAGGGCTTCGTAAGCCTTTTTTGTCGAATCAGCAATAGACCTGTCCAGATCAAGT CAACTGAATTGCTTCGGTTCTCTCACCAAGTGCCATCATTTACTATGACAGGTGAAGAGAGAGACGGTGTACCGAAAGGATCTTTTGAGCTTGATCCAGC TTCTATTCCTGAAAAAATGGAAGAAATCGATGTTCCAAGAAATTTGGAAGGCCGGGATGGTGATAGGAATTCCAAGGACGTGCATTCTGAATTTCCTTGT GAAGTGGAGCCTGAAGTTGCAAGCGCTGATGATCTCGAAGCCAAGTTTGACGGGACTCCTGCTAAATCCGATCATCCTGAAACAGAACAAGTCCTCGACC CTCCTGCGGAATCCAATGATCCTGAAACAGAACAAGTCCCGGACTCTCTTGTGGAATCCGATGATCCTGACACAGAACTAGTCCTGGACCCGGAGTACTT CGATTTTGACGGTGAGAAAGCAATAGAGAAGTTTGAAAAGGGTCAGATTTGGTCAGTGTACTGTGACGAGGATAGCTTGCCCAAGTACTATGCGCTGGTA ACCAAGGTTGATAAGCCGATGATTAAGATCAAGTGGCTCCGATTGGCTCATCTACCTAGTGGTGCGATTAAGTGGGCTGATAAGAAGATGGTCACTACTT GTGGAAGATTCAAAGCTACCGGGGGCAGCGATGAATATGAATCTACTGGACCCTTTTCGCATCTGGTAAATGCAGAATCTGTTGGCAGGAGCAAGGGGAA GAATGAGTATAACATAGTCCCCTCTGAAGGCGAGGTTTGGGCGATGTATAAGGACTGGACTCACACCTTGAGCCCATCCGACTTGGATACTTGCGAATAT GATGTAGTTCAAGTTCTAGAGCGAAATGAGCTGCAGATTAAAGTTTCGTATTTGGAGCGTGTGAAAGGTCACAATTCAGTTTTCAGAGCTTTAGCTAACC AAGGATCATCAGGTACGACAGTTAACATGTGCGAGTTGCTTCGATTCTCTCACCGAATCCCTGCTTTCCGGCTGACAGAAGAGCATGGATGCTTGAGTGG GTTATGGGAACTGGATGCAGCAGCATTGCCAGCTCGCTATTTTACATAG
AA sequence Show only first row Show all	>Lus10033983 pacid=23154810 polypeptide=Lus10033983 locus=Lus10033983.g ID=Lus10033983.BGIv1.0 annot-version=v1.0 MECNKEEAVRAKSLAETKMQNKDFAGARKMAIKAQKLYNELDKISHILIICDVHCAAELKVSGTEMDWYGILQIERTADEITIKKQYRKFALLLHPDKNN FPGAESAFKLIGEAQRVLLDKGKRSLHDMKRSVSRPAQGSTYSSTSGAQNGFNGFNGCVGGSNFQHQRPQQPATQPGSVNSRRTFWTDCPFCQSRYQYYV EIINRSVVCQHCHKPFIAHEKSAQGMPTVKKFSQPVFHPRNDAPQGAVKVDVGSQRNASKGHSKVESQKKQGTVKVEVGLQGNSSKGHSKVESQKKPSDS MAAPANSSRKRSWKKEDDFIVSSDSESSSSDEDEEPMMPDVGDLASYKERPRRSVRSKQKVSYQENKSDDEESRTPQKKAKENGPTEESMHSSVDAVARG KNKLNTEDLNEDDETRNVKEKEEMNKNGSMRSFENDSDSDADQEMESVPYICPDPEFNDFDKKRDVKLFQAGNIWAIYDEFSGMPRFYARINRVFSGGLK FRITWLEADPNSDDEQKWASAGLPVSCGKFKLGSSTDVEDLNLFSHQAEWEKGNRCDAYEIVPRKGEIWALFKTWDINWKSQTDHTKRDLEYDFVEILSN FSENKGVSVLYLGKLKGFVSLFCRISNRPVQIKSTELLRFSHQVPSFTMTGEERDGVPKGSFELDPASIPEKMEEIDVPRNLEGRDGDRNSKDVHSEFPC EVEPEVASADDLEAKFDGTPAKSDHPETEQVLDPPAESNDPETEQVPDSLVESDDPDTELVLDPEYFDFDGEKAIEKFEKGQIWSVYCDEDSLPKYYALV TKVDKPMIKIKWLRLAHLPSGAIKWADKKMVTTCGRFKATGGSDEYESTGPFSHLVNAESVGRSKGKNEYNIVPSEGEVWAMYKDWTHTLSPSDLDTCEY DVVQVLERNELQIKVSYLERVKGHNSVFRALANQGSSGTTVNMCELLRFSHRIPAFRLTEEHGCLSGLWELDAAALPARYFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10033983 [exp]	0	1
AT3G15120			P-loop containing nucleoside t...		Lus10013677 [exp]	2.2	0.9203
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	2.2	0.9416
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	4.7	0.9334
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	7.3	0.9178
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10012795 [exp]	8.4	0.8979
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	8.7	0.9273
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	11.5	0.9249
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10021457 [exp]	14.1	0.8751
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	18.3	0.9083
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025704 [exp]	19.6	0.8927

Compare expression of checked genes

Lus10033983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.