Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21480 301 / 3e-86 BRCT domain-containing DNA repair protein (.1) AT4G03130 228 / 2e-62 BRCT domain-containing DNA repair protein (.1) AT2G41450 64 / 5e-10 N-acetyltransferases;N-acetyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038633 [exp] 891 / 0 AT3G21480 317 / 5e-92 BRCT domain-containing DNA repair protein (.1) Lus10037907 [exp] 561 / 0 AT3G21480 323 / 3e-94 BRCT domain-containing DNA repair protein (.1) Lus10012794 [exp] 493 / 2e-167 ND / Lus10012790 [exp] 244 / 5e-72 AT3G21480 112 / 1e-26 BRCT domain-containing DNA repair protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014700 [exp] 391 / 4e-118 AT3G21480 366 / 4e-109 BRCT domain-containing DNA repair protein (.1) Potri.014G135520 [exp] 278 / 4e-79 AT4G03130 284 / 2e-83 BRCT domain-containing DNA repair protein (.1) Potri.006G045100 [exp] 79 / 8e-15 AT2G41450 487 / 2e-167 N-acetyltransferases;N-acetyltransferases (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033984 pacid=23154665 polypeptide=Lus10033984 locus=Lus10033984.g ID=Lus10033984.BGIv1.0 annot-version=v1.0 ATGGTTTCCATTGGAGATGACGGCGGCGGTGTGGTTCGACCACTGGAAGGCGACTCAACTCCCGATTCTGCTGCGGGGATATCTCCTCCTTTGAATTCGA AATGCTTTCCGGTATACTCGCCAGGCCAGAGGGATGGCTACGAAGTTGATTACTATATGGAGACAAATAAGGTTCTGTATGATGATATAATTCCTGTTGA AGATGCTGTGGAGACCCAAGTCACGAACTATGGGAATGAAACACAAATACTAGATGATCCAGACGTGTCAGCAAGTATGGACACCCAGGTAATCGACGAG TTAAGTGATCGAGACTCCGTTGATGGTGATGGTGAAGCAAGTGACACAACTGAAGTTTTGGGTGGTGGTGATGAGCTCTCTGGTGATGAGTCAAGGAGGG TAGATAAGGTTCAGTGCCTTTCTTATGATGATTGTGAAGAGAAGCAGTTTGCGGATCAATCAACTGCTTTGTCTCACCAACAGTCCAGCTCAGCATCTGT TCCACGATTTGTTTCAGTTCGTATCGAAGCTTTGCGAGTTTCTCCTCTAGTAGCTCATAGAAATTCCCCGAAGCATTCTGGAAACGGTTGTTGTTCGGTT CTGAACATTAGCCATTCACCAGAGCAGTCAGCTTCGGGGAGTAACATTTTAAAAACAATTGGCTGTGATGAAATGATTAGTGAACCTGATACAGGAGGAC AAAATGGAAAAGTGAAGGAACTGGATAATGGAATCAAGTCTAAGGTTAATTCTTCTACAGTGAGAGTGCTGTTCAATGTTGGTTCCACTGTTGAAGATGG TGGTCTGTTCTGTACTGGCAGCATCACTGAAACAAAAGAAGTCACCCAGTCACCTACTATTGAGGAGGAGTTGGCAGGGTTAAGTTATGTGGATTCACAG GAACCTGGTGAGGCATCACAAGCTGATGCACTTGCATTTGTGGAAAGGTTAATTGATGAGACTAAAGCCTCATTTGAAAATGATATTAATCTGGGAAATA TCTCCAGGAAAAGATCCGATTCTGTGTCAACTGCACGAGGGCCACAGAGTTTGGCCAAGAAAACCACCAACGGGGGCATAGGTGGGGTAAATGCGGTCTT TGACTGGGATAACATGCAGGAGGATGAAGGAGGCGGAGATTTTTTCCTTCGAAGAAAAGAAGATTTATTCCCTGGTAAAGAACCCTGCAGATCTCTTACG AATCCAGCATATGGGAGATCAAAAACACGGAATGTATTCAGAGGCAATCAAGGGAATTCAGAAGTTGAGACTCAGATGACAGTACACTCTGATTCAAAAA TAGTGGTTCAGAAGTTGAAGGTAACTGAAACTGAAACCAATAGAACTCTGAGGGATACCAGAAAAGATCTTCTCGGTGAATTTTCTGATCATGCTAACGG GAATGAATTAGCAGAACCATCTGAAACTATGATTGCCCCAGACTTTCATGATGTAGGATTGGACACCCAGTTAGCCGCTGATGCCATGGAAGCTTTACTA AATGGGGATCCTATTCCTAACTCTGTGCAGCAGTCTCCACTTAGAAAACCTAAACGGAGAGTTTCTCCAAAGCAATGTGCTTCCGTTAACAATCATGACG CTGAAAATGACAAAAGTCGGTTGAAGAAAATAAAGATGAGTGATGCTGTGTCGAGTAGCCATACTAGAAAAACGACTCGTAAAGTTTCTGGAAAGATTGA CATGGAGTTTGATGCGCGTCCTAGATTGATGACAAGGAGAGTGAAATGTGACTCTGACAGTAAAACCCGGAATAAGATTCCATCTAAAGATGGAGGATCT ATTCTAGGTATCCAACACGATGTGTTGACCAAGTGTGATGGGCCTGCTTTGAGGAGACGCCAGACAGTTAAGAAGCAGCAGGAGAATGCAAGTCATGCAA TGAAAGCTCGACGTACAAGACAATCATGTGTAGTTTCTTCCTTGAGAACAGCTGAGAATGTAACTGTTGACGTGGATGAATACAGGGACTCTACAACGGG AAATCCTGATTGTGAACAGAGTCCAGCTGGTACATTTTCTGGGGAGACTGCTCAAGCCTTAAACGTAGAAGGGAAATCTTCAGAACTCACTTCTCCAACA TATAGGGAGCCAGATGGTCTACAGCAAAACCTGCTGGCTGCTATCAACCATTTAAGATTTCCTAGAAAACCAAGATCGAAACGGGACATGTCTGAGCAGC CCAAGGACCACAATGATTTGGGAAACTCTCATGGAATATTAAGGCGTAAGAAGGAGTCAAAAAATGTAATGGGGGCGAAGTTGGATGTGACAAGTCATAC TGGCAATCTAATGCCAGGTAAGTTGAGGAAGGGAGTAATCGAACCCTCCATTTCTGCTTCACCAGTTGGATATGTGACTCCTGCAAATGCTGCTTCCCCC ATTTGTACGGCCACTGGATTGTCCAAGAACAAGAACCTGACTACAACTTCTCGAAAGAGGAAAATTCATAGCTTATGCATCACTGAACCGGAACCTGTTA CCGAAATGAAAGATTCAAGAAAGAGGGATTTGGAAGATGTTCGAGTCCTTTTTAGCCATCACTTGGACGAAGATGTTATTAAGCGCCAGAAAAAGATTGT GGGCCGGCTAAAAGTTTCGACTGCATCCTCCATTACGGATGCGACACACTTCGTTACAGATAGGTTTGTGCGCACAAGGAATATGTTGGAAGCCATTGCT TCGGGAAAACCTGTGGTGACACCTTTGTGGCTTGAGCACGTTGGACGAGCCAAATACTTGATTGATGAACAGAAATACATAATGCGAGATGTCAAAAAGG AAAAGGAGATAGGATTCAACCTGGCAGTTTCATTAGCACATGCACGTCAGCGTCCACTTCTTCAGGGCCAAAAAGTCTTGATTACCCAAAATGCAAAGCC CAGTAAAGAGATCTTATCTGATCTGGTTACAGCAGTTCATGGCAAACCGATTGAGAAAGTTGGTAGATCTGCTTTGAAGGATGAAACACTCACCCAAGAA CTTCTGGTCTTATCTAGCGAGGAAGATTATGAAATCTGTGTTCCTTTCCTCAAAAGAGGTGCAGCCGTGTACAGTTCGGAGCTGCTACTGAACGGAATCG TCGCGTGGAAGCTAGAATATGACAGGCATAGACTCTTCAGGGATCATGTCAAAAACAGATAG
AA sequence Show only first row Show all	>Lus10033984 pacid=23154665 polypeptide=Lus10033984 locus=Lus10033984.g ID=Lus10033984.BGIv1.0 annot-version=v1.0 MVSIGDDGGGVVRPLEGDSTPDSAAGISPPLNSKCFPVYSPGQRDGYEVDYYMETNKVLYDDIIPVEDAVETQVTNYGNETQILDDPDVSASMDTQVIDE LSDRDSVDGDGEASDTTEVLGGGDELSGDESRRVDKVQCLSYDDCEEKQFADQSTALSHQQSSSASVPRFVSVRIEALRVSPLVAHRNSPKHSGNGCCSV LNISHSPEQSASGSNILKTIGCDEMISEPDTGGQNGKVKELDNGIKSKVNSSTVRVLFNVGSTVEDGGLFCTGSITETKEVTQSPTIEEELAGLSYVDSQ EPGEASQADALAFVERLIDETKASFENDINLGNISRKRSDSVSTARGPQSLAKKTTNGGIGGVNAVFDWDNMQEDEGGGDFFLRRKEDLFPGKEPCRSLT NPAYGRSKTRNVFRGNQGNSEVETQMTVHSDSKIVVQKLKVTETETNRTLRDTRKDLLGEFSDHANGNELAEPSETMIAPDFHDVGLDTQLAADAMEALL NGDPIPNSVQQSPLRKPKRRVSPKQCASVNNHDAENDKSRLKKIKMSDAVSSSHTRKTTRKVSGKIDMEFDARPRLMTRRVKCDSDSKTRNKIPSKDGGS ILGIQHDVLTKCDGPALRRRQTVKKQQENASHAMKARRTRQSCVVSSLRTAENVTVDVDEYRDSTTGNPDCEQSPAGTFSGETAQALNVEGKSSELTSPT YREPDGLQQNLLAAINHLRFPRKPRSKRDMSEQPKDHNDLGNSHGILRRKKESKNVMGAKLDVTSHTGNLMPGKLRKGVIEPSISASPVGYVTPANAASP ICTATGLSKNKNLTTTSRKRKIHSLCITEPEPVTEMKDSRKRDLEDVRVLFSHHLDEDVIKRQKKIVGRLKVSTASSITDATHFVTDRFVRTRNMLEAIA SGKPVVTPLWLEHVGRAKYLIDEQKYIMRDVKKEKEIGFNLAVSLAHARQRPLLQGQKVLITQNAKPSKEILSDLVTAVHGKPIEKVGRSALKDETLTQE LLVLSSEEDYEICVPFLKRGAAVYSSELLLNGIVAWKLEYDRHRLFRDHVKNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	3.2	0.8219
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	8.0	0.8165
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	8.0	0.7982
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	8.5	0.7953
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	8.7	0.8118
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	12.0	0.7875
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	14.1	0.8042
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	16.0	0.7755
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	19.0	0.7746
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Lus10036169 [exp]	19.7	0.7787

Compare expression of checked genes

Lus10033984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.