Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06330 342 / 1e-109 RING/U-box superfamily protein (.1.2.3) AT5G18760 261 / 2e-79 RING/U-box superfamily protein (.1) AT5G60580 203 / 5e-57 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 175 / 2e-47 RING/U-box superfamily protein (.1.2) AT3G09760 175 / 5e-47 RING/U-box superfamily protein (.1) AT2G37950 71 / 2e-13 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 63 / 6e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 61 / 5e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 58 / 2e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 58 / 7e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012791 [exp] 767 / 0 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 447 / 4e-153 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 436 / 9e-146 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10037906 [exp] 332 / 2e-105 AT3G06330 232 / 1e-71 RING/U-box superfamily protein (.1.2.3) Lus10012792 [exp] 238 / 6e-74 ND / Lus10037410 [exp] 202 / 3e-56 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 200 / 8e-56 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10022585 [exp] 196 / 2e-54 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 201 / 3e-53 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014950 [exp] 435 / 2e-145 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 429 / 3e-143 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 399 / 1e-131 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.016G022900 [exp] 211 / 7e-60 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 209 / 6e-59 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.009G013300 [exp] 207 / 2e-58 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 196 / 3e-54 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.010G115600 [exp] 65 / 3e-11 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 65 / 3e-11 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.006G094000 [exp] 62 / 2e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10033985 pacid=23154735 polypeptide=Lus10033985 locus=Lus10033985.g ID=Lus10033985.BGIv1.0 annot-version=v1.0 ATGCATCATCCACCTCCATCTCAGCCGGCAGCCACCGGTGGAGCTGCAGATTCAAAGGCTTCACCATCTTCTTCTTCTTCTTCTTCCTTGCAGGCTGATT TGGAAAATGGGACACCATCTAATGAAGGAATTACAAGGGCAGGAGGAGCGAGTATGAGGAAGAGTGATCTTTCTCTACAAATACCACCTAGACCAGCAGC TCCTTTTGGAGGTAGCCGTAGCAATGGCAAAGGATTGCTCAACTCTCAAACTTCATTCAAGGTAAGCCCTACATCATCATCGGTAGGCTTTCTGCGGGCG CTAAGCTTCAAGAAGAGTGGTGCACTTGAAGGTGAGAGGAGCTCCCTGCTCAACTCCTCAGACACCTCATCACATCCTCCACTGAGTCCTATCATAGCCA ATCTCAAGGCTGCATTTTCCAGATGCACTTCACTTCCACACCCATCAGCTTTTTCTCCCACAGTCTCGGTCCCCACTCCTGTTTCAGCTCGATTTCCTGG GGAAATACGGCAGTTTCAGAAACCAGTAGTTTCAAGGTCTCTTTCCGTCCCAGGGCGAAATATTGTGATTGTTCGGTCTGCATCTTTTGCTACGCCCAGA TTTCAAACGAGTGGAAGTTCTTCTGATGCTCAAATAAGTACAGATCCCAATGAAGGCGATGACGATGATGAACACATCCCAGAAGAGGAGGCAGTATGCA GGATCTGTCTCGATGCATGTGAAGAAGGAAACACACTCAAAATGGAATGCAGTTGCAAAGGAGACCTCAGACTTGTACATGAAGAATGTGCCATTAAGTG GTTTAGTACCAAAGGAAACAAGAACTGTGAAGTGTGCCGTCAAGAAGTCAAGAACTTGCCTGTGATCTTATTCCGAGTAACAAGCTCTGCCCAGTTTAAC GGCAGGCAGGCACCGAACGGCCAGAGCTTGAGGGCACAACAAATAAGTGCCTGGCAGGACTTTGTTGTTTTAGTACTGATTAGCACAATATGCTATTTCT TCTTCCTGGAGCAATTACTGATCCAGGACATGAAAACACAGGCGATAATAATCGCAGCTCCGTTTGCATTTGCGTTAGGCGTTATGGCATCGATATTCGC AGTCATCCTAGCGATCAGGGAATTCATATGGACATATGCCGCGCTGGAGTTTGCGCTGGTGGCCGTAACGGTGCACCTTTTTTATTCCGTACTGGATCTG GATGCGATATACGCAATACTACTAGCGGCAGTGTTTGGGTTTGCAGCAGCAATGAGTCTGAACTCATTGTACATACAGTACTTCATATGGAGAGCTCAGG CTGCTCAAAACTCTAATGGCTTCAATGCTCCCCCAATGCAAGGCTCTGATTATTATGATTTAGAAGCAGCGGTACCACCACCACCGTCCCACACCATTAA TAACCACCATGGTGCTGCTGCAGAAGTACAGGTTGATCTGGAAAATGGGTGGCCCATGTCGGACCTTTCGGTCGAAATCCCCATCGGTCCAGCCCCCTGT TTCGCCGAGAGCTGTCATGGGAAAGGCATACTCCACTGTCACAGCTTGCGGTTCAAGATCAACAGCTCCATATTAGACGACGGTCGGAGAAGCTTTTGTC TCAGTTCAGCAGCTCAGGGAAGTCCCACCAAATCAATACTACCAACGTCAACGCTCTTCTGGCGACAATGCACCTCGCTTCCCACCACACCCATTTCCTC TTATGTCTCACTGCAGTCATTCACATCCCAGAAACAACAACAGCAAGTCGTAGATCCTTGTCAAGATCCAGAAGTCCCGTCAATCGTGATCCATAACGGC ACGGAAGAAAGAGTACCTGAAGAAGACGAGGAGGGGATATGCAGGATCTGTCTCGACACAATCAGAGAAGGGGAGAAGATGAAACTGGAATGCGGTTGCA AAGGCGATCTCAGGCTGGTACACGAAGAGTGTGCAGTAAGTTGGTTCAGCACCAAAGGAAACAAAGTCTGCGAGATTTGCGATCTGGAGGTTACGAACTT GCCTGTCATCGTGTTCAGGGAAGACAGCTTGATTAAGACCGACGATGGCGACGACGAGCTAGATACCCAGAGCTGGGAGGCGAATGACGAAAGAAGTTCG GTGCAGGAGTTTTTGCTGCTGGTTCTGATGAGCACAGTGGCCTACTTCTTCGTGCTGGAGCTTCTACTGGTTCAAGAGAAGACATCTAAAGGACTAGCGA TTGCAGCACCATTTGCGTTTGGACTGGGGATTCTGGCATCAATGTTCGCACTCATGCTAGGGCTGAAAGAGCATGTATGGAGATATGCAATACTAGAGTT TGCACTAGTTTCCGTCGCAATTCACCTCGCTTACATGATCCTAAACGTGGAGCCAGTATACTCCATAATGCTTGGATCTGTCATAGGAATGGTGTTGGCC GTGAGCACCAACGCGTTGTATCGGCATTACAGCTCCCCATCTACTACTTACAACTAG
AA sequence Show only first row Show all	>Lus10033985 pacid=23154735 polypeptide=Lus10033985 locus=Lus10033985.g ID=Lus10033985.BGIv1.0 annot-version=v1.0 MHHPPPSQPAATGGAADSKASPSSSSSSSLQADLENGTPSNEGITRAGGASMRKSDLSLQIPPRPAAPFGGSRSNGKGLLNSQTSFKVSPTSSSVGFLRA LSFKKSGALEGERSSLLNSSDTSSHPPLSPIIANLKAAFSRCTSLPHPSAFSPTVSVPTPVSARFPGEIRQFQKPVVSRSLSVPGRNIVIVRSASFATPR FQTSGSSSDAQISTDPNEGDDDDEHIPEEEAVCRICLDACEEGNTLKMECSCKGDLRLVHEECAIKWFSTKGNKNCEVCRQEVKNLPVILFRVTSSAQFN GRQAPNGQSLRAQQISAWQDFVVLVLISTICYFFFLEQLLIQDMKTQAIIIAAPFAFALGVMASIFAVILAIREFIWTYAALEFALVAVTVHLFYSVLDL DAIYAILLAAVFGFAAAMSLNSLYIQYFIWRAQAAQNSNGFNAPPMQGSDYYDLEAAVPPPPSHTINNHHGAAAEVQVDLENGWPMSDLSVEIPIGPAPC FAESCHGKGILHCHSLRFKINSSILDDGRRSFCLSSAAQGSPTKSILPTSTLFWRQCTSLPTTPISSYVSLQSFTSQKQQQQVVDPCQDPEVPSIVIHNG TEERVPEEDEEGICRICLDTIREGEKMKLECGCKGDLRLVHEECAVSWFSTKGNKVCEICDLEVTNLPVIVFREDSLIKTDDGDDELDTQSWEANDERSS VQEFLLLVLMSTVAYFFVLELLLVQEKTSKGLAIAAPFAFGLGILASMFALMLGLKEHVWRYAILEFALVSVAIHLAYMILNVEPVYSIMLGSVIGMVLA VSTNALYRHYSSPSTTYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	0	1
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	2.8	0.8306
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10037279 [exp]	3.2	0.7850
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10041842 [exp]	5.3	0.8117
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	5.7	0.8174
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	5.8	0.8187
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	8.0	0.7790
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	8.3	0.8182
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	8.9	0.8155
AT1G71080			RNA polymerase II transcriptio...		Lus10004071 [exp]	9.6	0.7459
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	10.7	0.8119

Compare expression of checked genes

Lus10033985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.