Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15560 1135 / 0 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 926 / 0 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 676 / 0 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT5G50850 46 / 7e-05 MAB1 MACCI-BOU, Transketolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012789 [exp] 1365 / 0 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 948 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 942 / 0 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 940 / 0 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 939 / 0 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 929 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 929 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019992 [exp] 820 / 0 AT4G15560 504 / 7e-171 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10013117 [exp] 689 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G015200 [exp] 1214 / 0 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 1194 / 0 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 944 / 0 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G171700 [exp] 942 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 721 / 0 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 699 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.001G061400 [exp] 46 / 6e-05 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 44 / 0.0002 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033987 pacid=23154876 polypeptide=Lus10033987 locus=Lus10033987.g ID=Lus10033987.BGIv1.0 annot-version=v1.0 ATGGCGCTCTGTGCATTCTCATTTCCTGCTCATGCCAAAAGACTGGTAGATCCTCTTCCAAAGTTCTATTCTTTACCATCTAATGGAGCAGATCTGCTCT CCCAATTCCCCCACAAGCCCAGCCAGACACATGCAAGGAGAAAGGGTAACGGTGGAGTTTATGCTTCATTATCAGAAAGAGGAGAGTATCATTCTCAGAG GCCGCCAACGCCTCTCCTTGACACCATTAATTATCCAATTCACATGAAGAATCTATCTCTCAATGAGCTGAAACAACTAGCAGATAAGTTGAGGTCGGAT GTGATCTTCAATGTCTCCAAAACTGGAGGCCACTTAGGCTCCAGCCTTGGTGTTGTGGAGCTCACTGTGGCTCTTCACTATGTATTCAATTGTCCTCAGG ACAAGATTCTTTGGGATGTTGGCCATCAGTCCTATCCTCATAAGATCCTGACTGGAAGAAGAGACAAGATGCACACTATCAGACAGACAAATGGACTGGC TGGCTTTACAAAGCGGTCAGAGAGCGAATATGATTGCTTTGGAACCGGTCACAGCTCAACTACTATTTCTGCTGGCTTGGGAATGGCTGTGGGGAGAGAT CTAAAGGAAAGAAAGAACAATGTAGTTGCTGTCATTGGCGATGGAGCAATGACTGCTGGACAGGCTTACGAAGCTATGAACAATGCTGGTTACCTTGACT CTGACATGATTGTAATTCTCAATGACAACAAACAAGTTTCCTTACCAACTGCTAATCTTGATGGGCCAATACCACCCGTTGGAGCTCTAAGTAGCGCACT TAGCAGGCTGCAATCGAACCGGCCTCTCAGAGAACTCAGAGAAGTTGCTAAGGGAGTCACGAAACAAATTGGTGGACCAATGCATGAATTGGCAGCCAAG GTTGACGAGTATGCTCGTGGAATGATAAGTGGTTCAGGATCAACCCTTTTTGAAGAGCTTGGCCTTTATTATATTGGTCCAGTTGATGGCCATAGTATAG ATGACATTGTGGCCATTCTCAAAGAGGTTAAAAGTACCAAAGCTACCGGTCCAGTCTTGATCCATGTTGTGACAGAAAAAGGCAGAGGATATCCATATGC TGAAAAGGCTACTGACAAGTACCATGTAGTGGCAAAGTTTGATCCTGTGACTGGAAAGCAATTCAAGTCCAGTGCTCCTACTCAATCTTACACTACATAC TTTGTGGAAGCTTTGATTGCTGAAGCAGAAGTGGACAAAGATGTCGTAGCAATCCACGCTGCAATGGGAGGTGGAACGGGCTTAAATCAGTTTCTTCGCC AGTTCCCAACAAGGTGCTTTGATGTCGGAATTGCAGAACAGCATGCTGTAGTCCATGATGTTGATCTTCAAAAGCTACCTGTAAGGTTTGCCATGGATCG GGCAGGGCTAGTTGGAGCTGATGGGCCAACACATTGTGGAGCTTTCGATGTAATGTTCATGGCTTGTCTTCCTAACATGGTGGTGATGGCCCCTTCAGAT GAGGCAGAGCTTTTTCACATGGTTGCTACTGCTGCTGCCATTGATGATCGTCCTAGCTGTTTCCGGTATCCAAGAGGTAATAGTTTGGGGGTTGAGTTGC CACCAGGAAACAAAGGAGTCCCTCTTGAGGTAGGTAGAGGAAGGATTCTGATAGAAGGTGAAAGAGTGGCACTGTTAGGATATGGAGCAGCAGTCCAAAG TTGTTTGGCTGTTGCATCTTTAGTTGAACCTCATGGTCTCAAGGTAACAGTTGCAGATGCTCGATTCTGCAAGCCATTAGATCAGGCATTGATCAGGAGC TTGGCGAAAACCCACGAGGTTTTGATCACGGTTGAAGAAGGATCCATTGGTGGGTTTGGTTCCCATGTTGTCCAGTTCCTAGCACTGGATGGACTACTCG ATGGAAATCTTAAGTGGCGGCCGCTGGTTCTTCCTGACCGGTATATCGACCATGGATCACCTGCAGACCAAATGTTAGAAGCTGGACTTACACCATCACA CATTGCGGCAACTGTATTCAATATACTTGGACAAAAGAGAGAAGCTTTGCAGATTATGTCATGA
AA sequence Show only first row Show all	>Lus10033987 pacid=23154876 polypeptide=Lus10033987 locus=Lus10033987.g ID=Lus10033987.BGIv1.0 annot-version=v1.0 MALCAFSFPAHAKRLVDPLPKFYSLPSNGADLLSQFPHKPSQTHARRKGNGGVYASLSERGEYHSQRPPTPLLDTINYPIHMKNLSLNELKQLADKLRSD VIFNVSKTGGHLGSSLGVVELTVALHYVFNCPQDKILWDVGHQSYPHKILTGRRDKMHTIRQTNGLAGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRD LKERKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTANLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK VDEYARGMISGSGSTLFEELGLYYIGPVDGHSIDDIVAILKEVKSTKATGPVLIHVVTEKGRGYPYAEKATDKYHVVAKFDPVTGKQFKSSAPTQSYTTY FVEALIAEAEVDKDVVAIHAAMGGGTGLNQFLRQFPTRCFDVGIAEQHAVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVMFMACLPNMVVMAPSD EAELFHMVATAAAIDDRPSCFRYPRGNSLGVELPPGNKGVPLEVGRGRILIEGERVALLGYGAAVQSCLAVASLVEPHGLKVTVADARFCKPLDQALIRS LAKTHEVLITVEEGSIGGFGSHVVQFLALDGLLDGNLKWRPLVLPDRYIDHGSPADQMLEAGLTPSHIAATVFNILGQKREALQIMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10033987 [exp]	0	1
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	2.4	0.8912
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012789 [exp]	4.5	0.8670
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	4.8	0.8442
AT1G63430			Leucine-rich repeat protein ki...		Lus10008310 [exp]	6.0	0.8532
AT5G44230			Pentatricopeptide repeat (PPR)...		Lus10022090 [exp]	10.8	0.7981
AT1G21350			Thioredoxin superfamily protei...		Lus10028617 [exp]	12.8	0.8803
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10040706 [exp]	14.8	0.8269
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	15.7	0.8823
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	18.3	0.8629
AT1G54820			Protein kinase superfamily pro...		Lus10004461 [exp]	19.1	0.8716

Compare expression of checked genes

Lus10033987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.