Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52390 194 / 4e-62 PAR1 protein (.1) AT3G54040 160 / 9e-49 PAR1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012788 [exp] 443 / 3e-159 AT5G52390 198 / 7e-64 PAR1 protein (.1) Lus10021114 [exp] 151 / 2e-45 AT3G54040 192 / 6e-63 PAR1 protein (.1) Lus10017196 [exp] 147 / 5e-44 AT3G54040 191 / 1e-62 PAR1 protein (.1) Lus10040714 [exp] 130 / 5e-37 AT5G52390 136 / 2e-40 PAR1 protein (.1) Lus10040715 [exp] 130 / 7e-37 AT5G52390 138 / 4e-41 PAR1 protein (.1) Lus10040702 [exp] 127 / 6e-36 AT5G52390 138 / 2e-41 PAR1 protein (.1) Lus10016450 [exp] 128 / 1e-34 AT5G52390 137 / 6e-39 PAR1 protein (.1) Lus10018204 [exp] 80 / 2e-18 AT5G52390 85 / 2e-21 PAR1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141800 [exp] 227 / 3e-75 AT5G52390 213 / 6e-71 PAR1 protein (.1) Potri.015G144800 [exp] 218 / 3e-71 AT5G52390 208 / 5e-69 PAR1 protein (.1) Potri.016G106800 [exp] 156 / 1e-47 AT3G54040 191 / 1e-62 PAR1 protein (.1) Potri.006G094300 [exp] 156 / 2e-47 AT3G54040 198 / 2e-65 PAR1 protein (.1) Potri.009G039950 [exp] 132 / 5e-38 AT3G54040 140 / 1e-42 PAR1 protein (.1) Potri.009G040000 [exp] 127 / 7e-36 AT5G52390 141 / 3e-42 PAR1 protein (.1) Potri.009G039900 [exp] 115 / 8e-32 AT3G54040 118 / 4e-34 PAR1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06521 [flax] [poplar] PAR1 PAR1 protein
Representative CDS sequence Show only first row Show all	>Lus10033988 pacid=23154700 polypeptide=Lus10033988 locus=Lus10033988.g ID=Lus10033988.BGIv1.0 annot-version=v1.0 ATGGCTTCAGGTTTCGGCCTCGCAACCCTCTCCATTGCTCTGCTTCTCTGCTGCTCCCTCCACAAAACTCTCGGAGAAGAAGGAACAACAACGTCCGCGG TGACATGCGAGAAGCTGGAGCAAGGCGAGTGCGCATACGCGGTCTCCTCGGCCGGGAAGCGATGCGTGCTGGAGAAGCGCGTGAAGATGAGGAGCGGGAC AGAGGAGTACAGCTGCCGAACGTCGGAGATCGAAGCCGACAAATTGAACAACGTGGTGGAGACCGATGAGTGTGTCAAGGCTTGTGGCTTGGAGAGGAAG GTACTCGGGATATCCTCCGACTCTCTGTTGGAGCCTGGCTTCACGCGCTACCTTTGCTCTCCTCACTGCTACGATGCCTGCCCCAACATCATCGATCTTT ACTTCAATCTCGCCGCCGGTGAAGGAGTATTTCTTCCCCAATTGTGCGCGTCAAAAGAAGGAAGAAACAGAGGAGAAAGGAGGGAATTGATGGGGGAGAT TAAGAGCTCTGGAGGAGGATTGATGCATATAATTGCTCCAGGACCAGTTGATGTTACGAGTTACGTGATCTCACCATCGATGGCGCCGACGCCGATGGAG GGAGTACCGGAAGCTTATGATGATCAGTTTTTGGTACCGGTACCAGCACCGGGGCCAGTGATGAATAGCGGTGGTGATGATGATCAGTTTCTGGTACCAG TTCCAGCACCGGGGCCAGTGATGAATAGTGGTGGTGATGATGATCATTTTCTAGTGCCGGTACCGGCACCCGGGCCAGTGATGAATAGCGTTGATGCCCC ATCTCCTGCCATTTATTTCTATCAGTAA
AA sequence Show only first row Show all	>Lus10033988 pacid=23154700 polypeptide=Lus10033988 locus=Lus10033988.g ID=Lus10033988.BGIv1.0 annot-version=v1.0 MASGFGLATLSIALLLCCSLHKTLGEEGTTTSAVTCEKLEQGECAYAVSSAGKRCVLEKRVKMRSGTEEYSCRTSEIEADKLNNVVETDECVKACGLERK VLGISSDSLLEPGFTRYLCSPHCYDACPNIIDLYFNLAAGEGVFLPQLCASKEGRNRGERRELMGEIKSSGGGLMHIIAPGPVDVTSYVISPSMAPTPME GVPEAYDDQFLVPVPAPGPVMNSGGDDDQFLVPVPAPGPVMNSGGDDDHFLVPVPAPGPVMNSVDAPSPAIYFYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52390			PAR1 protein (.1)		Lus10033988 [exp]	0	1
AT5G52390			PAR1 protein (.1)		Lus10012788 [exp]	1.0	0.8817
AT5G63180			Pectin lyase-like superfamily ...		Lus10022310 [exp]	4.9	0.7748
AT1G07860			unknown protein		Lus10036143 [exp]	8.7	0.6913
					Lus10041663 [exp]	19.1	0.7669
AT5G10120	EIL		Ethylene insensitive 3 family ...		Lus10024040 [exp]	23.5	0.6198
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	25.9	0.6523
AT4G12010			Disease resistance protein (TI...		Lus10006789 [exp]	26.0	0.6941
AT2G20160		MEO, ASK17	MEIDOS, ARABIDOPSIS SKP1-LIKE ...		Lus10004140 [exp]	32.1	0.6695
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10035911 [exp]	36.2	0.6291
AT5G44950			F-box/RNI-like/FBD-like domain...		Lus10018863 [exp]	36.2	0.5951

Compare expression of checked genes

Lus10033988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.