Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49000 303 / 3e-96 RNA polymerase III subunit RPC82 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012787 [exp] 811 / 0 AT3G49000 437 / 8e-149 RNA polymerase III subunit RPC82 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144900 [exp] 421 / 6e-142 AT3G49000 442 / 4e-151 RNA polymerase III subunit RPC82 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF05645 [flax] [poplar] RNA_pol_Rpc82 RNA polymerase III subunit RPC82 CL0123 [flax] [poplar] HTH PF08221 [flax] [poplar] HTH_9 RNA polymerase III subunit RPC82 helix-turn-helix domain
Representative CDS sequence Show only first row Show all	>Lus10033989 pacid=23154781 polypeptide=Lus10033989 locus=Lus10033989.g ID=Lus10033989.BGIv1.0 annot-version=v1.0 ATGATACCACGACATGGCATCATGTACGCCGTCCATCTCATCACCAATCACTTCGGAGATCTCGTTGCCAAAGTATGTGAATGTCTACTGCGCAATGGAC CATTGCCACTCCACGCCATAGCTCGACGAACTGAGCTCCCCCCCACTAAAGTTAAGAACAGTTTGCTCGTCTTAATCCAACACAACTGTGTGCAGGCTTT CAGCCTAGATGAAGCTGAGGATGGTGGGGAACCAGGAAAAATATATTTGCAGTATATGGCATTGTTTACTAACATACTTCATCGAGCGAGATTTTCCAAG TTCATGGATGTGGTGTCAAAAGAACTTGGTGGACCGTGTGTGGAGCTCCTCAAAGGTTTGCTAGAACATGGTAGGCTTACAGTTAAGCAAATTTTGGATC GAAAAGCTGAGGAAAATGCCAAGGAAAGTACCAAAACAGTGGGGATAGGTCCCAACGCAGTGCAAGAGAACCTTCATAAACTTGTAATGTCCCATTACGT TGAATCCTGTCCTGTCTCGGAACCTGTAGTTCCATCACAGGCTGATGACCCTGCTGCAAAGAGGCGAGCTGCGAAATCTGAAAAGGTAATTGTGGAAACA GTTACGCTGGAGCAGCGTGTTATGTCAGCAGCAATGCCTTCAGAAGTAAAAAGATTCTTATTTGCTCCAAACACTGACAAAATAACTGATAACGAGCAAA AAATGGATCAATCTCCGAGTAAAGATGTTGGGAAAAAGCGCAAGCTTGGTGATATGGAGTCTGATACAGCAGTTGCAGAAGAAGATGAAATCATGTGGCG TGCAAATTTTGAGGAATTAGCTCGTCGTCTTAGACATAAGGTCTGCATTGATACTACAAAAGCACGTTTGGATGATGAAGCTGCAACAGTTCTAAGTGCA ATGATTGAAGGATCTAGAACTGAAGAGAAGAAAGTTAAAACTGCAAGCTCAGTACCAATGTCGTTGAATTCTATCTATGAAGAGGTGATGAAGAACGAAA GGAACCACAGCATGACATTCGATCACGTCAGAACTTGCCTTCATCAAATGAGGTCTTCTCCAGCCTTTGTAAAAGGGGCTGATGAATACAGTATAGATTT CGCACAAATCATTGAAGCAGCTCAGAGTGAAGATGTCTGTATTCCCTTTCCATTCGGTCGAAACCCTTATTTTGAAAAGATATGGAAGGGATGCCTATAT AATGTTTCGGCTACTGTCGAGGGCTGGCTGCCTTATGGAGTCGGACAAGGACTTGATGATATCATGATTCAAACTCTGAAGACCGAATCTAAAGTATTCA AGAGTAATCCTATCCAATCCACTGTTCCTACGTTCTACGATGAATCCGTTTCTAATATCGCTCATACTGTATTTATCGATACGAAAGGGGCAACGAATAC TCTGTACAGAATGTGGGAGGACGGATACTTGATCATGCAGAAACTGGTTCTAGGTGGTTCTGCTGGTGCCAATGGATATGGGGGTTCCACATGCTTATTA TGGAAAGTAAACAAGAAGAATCTTTTGGAGACTGTTCTGGACGAGATGTTTCATGCTGCGTTAAATTTGAACCTACGTGCAGCACATGAGCTGGACCTAA ACAAAGAGGTGCTGAATATGCCTGCAGAAAAACGGCAAGGGGCAGACAAAGAGAAGTTTGACCAAATAAGGAGTGCGAGGTTGCTCATCAATTCGTCGTT GATGAAGATTGACGATGCCATTATGCTCTTCCATGACTTCTAA
AA sequence Show only first row Show all	>Lus10033989 pacid=23154781 polypeptide=Lus10033989 locus=Lus10033989.g ID=Lus10033989.BGIv1.0 annot-version=v1.0 MIPRHGIMYAVHLITNHFGDLVAKVCECLLRNGPLPLHAIARRTELPPTKVKNSLLVLIQHNCVQAFSLDEAEDGGEPGKIYLQYMALFTNILHRARFSK FMDVVSKELGGPCVELLKGLLEHGRLTVKQILDRKAEENAKESTKTVGIGPNAVQENLHKLVMSHYVESCPVSEPVVPSQADDPAAKRRAAKSEKVIVET VTLEQRVMSAAMPSEVKRFLFAPNTDKITDNEQKMDQSPSKDVGKKRKLGDMESDTAVAEEDEIMWRANFEELARRLRHKVCIDTTKARLDDEAATVLSA MIEGSRTEEKKVKTASSVPMSLNSIYEEVMKNERNHSMTFDHVRTCLHQMRSSPAFVKGADEYSIDFAQIIEAAQSEDVCIPFPFGRNPYFEKIWKGCLY NVSATVEGWLPYGVGQGLDDIMIQTLKTESKVFKSNPIQSTVPTFYDESVSNIAHTVFIDTKGATNTLYRMWEDGYLIMQKLVLGGSAGANGYGGSTCLL WKVNKKNLLETVLDEMFHAALNLNLRAAHELDLNKEVLNMPAEKRQGADKEKFDQIRSARLLINSSLMKIDDAIMLFHDF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49000			RNA polymerase III subunit RPC...		Lus10033989 [exp]	0	1
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Lus10029374 [exp]	2.4	0.7666
AT2G22530			Alkaline-phosphatase-like fami...		Lus10025722 [exp]	4.4	0.7954
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	5.5	0.7210
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10033865 [exp]	10.8	0.7465
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	55.7	0.6371
AT5G55550			RNA-binding (RRM/RBD/RNP motif...		Lus10011728 [exp]	58.3	0.6538
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10027357 [exp]	61.6	0.6682
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10008429 [exp]	65.1	0.6777
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	95.5	0.6336
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	131.5	0.6407

Compare expression of checked genes

Lus10033989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.