Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44710 296 / 1e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 137 / 9e-34 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G18790 99 / 5e-25 Ribosomal protein L33 family protein (.1) AT3G06320 99 / 5e-25 Ribosomal protein L33 family protein (.1) AT3G52660 101 / 3e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G71770 75 / 1e-13 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G34110 72 / 2e-12 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G22760 71 / 2e-12 PAB3 poly(A) binding protein 3 (.1) AT1G49760 64 / 4e-10 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 62 / 1e-09 PABP4, PAB4 poly(A) binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012785 [exp] 1213 / 0 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028162 [exp] 318 / 2e-94 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002689 [exp] 133 / 2e-32 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10030207 [exp] 130 / 1e-31 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10021351 [exp] 129 / 4e-31 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012786 [exp] 103 / 1e-26 AT5G18790 106 / 1e-32 Ribosomal protein L33 family protein (.1) Lus10043390 [exp] 111 / 2e-25 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 110 / 3e-25 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017026 [exp] 74 / 2e-13 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116400 [exp] 662 / 0 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 641 / 0 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 327 / 3e-98 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 319 / 3e-95 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G212400 [exp] 137 / 3e-34 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 137 / 5e-34 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G178200 [exp] 125 / 6e-30 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.014G104500 [exp] 122 / 3e-29 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.004G201900 [exp] 114 / 2e-26 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 113 / 4e-26 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00471 [flax] [poplar] Ribosomal_L33 Ribosomal protein L33 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10033990 pacid=23154885 polypeptide=Lus10033990 locus=Lus10033990.g ID=Lus10033990.BGIv1.0 annot-version=v1.0 ATGAGGACGCAAAGCAGAAATGCTGTGGCCAAAAGGCGCATGGAGAGAAAGCTTGCAACGGAATCTGTAGCTCCAAAAGCTTCAGAACTGGTACTCCAAC CCGGTTCGCCAGCTAAATCCTCCGTACAGACCACGGGCGAGGAGGTTGAACCACCTTCCCCGACTGTGGTTCCCGATGCAAAAGCTGATCAATCAGAAGA TGAAGATGCGCAAGTGTCAAATGGAACTGAGAGTATTATAATGGAGGCAAGACCTACTCCACCACGAACAAGGAGAGTAGTGAAGAAGGTCGTGAGGATG GTGAAGAAAAGACAATTGAAGGTTATTACTACTCCTACTCCTCAAGGAAATATTTATGAGGAGGTGACAGAATCAGTGAAGGTTGAGACTGAAGATATCA CCAAAGTAGAGATGACAGGCACAGAGAGTGTTGATGCTGGCAAGACAAAGGACTCTGATGGAGAAGAAAATGTTGAAAAATCCTCCGAGAAGGAAGAAAA TATGGTCAATCTAGAGCCTGTGGGTGAAAACAAATCACAAATGGAAGGGGGTGAACATGTAGGGAAAGAGGAAGAAATTGTTGTTAGGTCTCCAGAGGCT GCTCAACCTACTCCTGATGCTCGTGCAGGAACTATAGAGAAAGCACAGATTACGCTAGAATTGGATTTGTCTGCTAAAGTGACACATAAGGCTGATCTCG TTAATCCAGGAGGAAGTAATGAAACTCAAGTCATAGGAGCAAATGCTTCATCAGTGCAAGATGAGGATGCTCATGATGAGGTATATGAGGGCCCCCTGGA CTTAGAAGCAGTGAAGAAGGTCCCAAAAGAGACTATGGAAGGAAGTCTTGCTGATAAGGGGCAATGCGAAGCTGATGCGGTTATTCCAGAAGGAAGTAAT GAGACTGAAGTCGTAGGAGGAAGTACCTCTTCAGCAGTGCAAGGAGAATGTGCTCATGATCAGGTATATGGAGATCGCTTGGACTTGGGAGGACCTGTTG AGGATAAATTGATAGAAGATGACAATGTGGAGTGTGCTGGTGATGTTATGGTATTGGAGGAGGAACATAAGCAACTAACTGCTGTTGCAGAAGATCGCAA AACTAAGAAAGAGTATGAGATTTTCGTAGGTGGTCTGGGTATGGATGCTACTGAGGAGCATGTGAAGAAGGCTTTTGAATATGTTGGTCCAGTAGTTGAA GTTCGACTGTACAAGGATCTTTCAACCGACAAAAAAACAGGCTACGCATTTGTGAGGTTTTCCAATAAGGAGCATGTTAAGCGAGCTTTGTCAGAAATGA AAAACCCCGTGATTTGTGGAAAACGATGTGCAACAGCGCCAAGTGAGGACAATGACACATTGTTTCTTGGCAATATATGCAACACATGGACCAAAGAAGC TATAAGGCAAAGGCTAAAGGATTATGGTATAGAACGTGTTGAAAGCATCAACCTTGTTTCTGATGCCCAGCATGAGGGAAGAAGTCGTGGGTTCACATTT CTCGAGTTCTCATGCCATGCTGATGCGATGCTGGCGTACAAAAGGCTCCAGAAGCCAGATGCTGTCTTTGGCCATCCTGAGAGAACTGCAAAAGTGGCAT TTGCTGAACCCATAAGCGAGCCTGACCCTCAAGTAATGGCTGAAGTGAAAACGGTATTTCTTGATGGCCTTCCTCTAAACTGGGATGAAGACCATGTGAG GGAACGTGTTAAAGGATATGGGGAAATCACACGAATAGCACTGTCCAGGAATATGCGAACAGCTAAGAGAAAGGATTTTGGTTTTGTGGATTTCTCCACT CATGGTGCTGCCATTTCCTGTATTAATGGAATAAATCATGCAGAAACCAGCGGTGGAAACTCAATGACAAAAGTGAGAGCCAGGCTTTCCAATCCTCTAC CTAAGACTCAAGCTGTGAAGGGAGGAATGCGTGGTGGTTTTCTAATTGGTCGTGTTGGTCGTGCTGATACTGTGAACACTTCAAGATCTGGTAGGGGAGT CGCGCGAAGTGGGCGTCAGTTTAACTCGACTAATATTCAGCGGGGCAGGGGATTCTATCAAAGTGGGCGTGACCAAACTTACAGAGTGGCTCCTGAAGAC TATGGATTGAACAATAGATATGATATATTTCATGGCAGGACTCCTGAACGAGGAGGGAGAAGGGATCCTCTAGGAGGTAGTTATCAACATGCTGATAGAG GTGTTCCTTTTGCTGGCCCATATGGATCCAATGTAAACAGAACTTGGCATGATGTGCATGAAGGGGGCCCAAGTGACCAGATTCACTTTAGGAGACAACC CTTTTCTGAAGAAGCATTTGATGGACCTTATGGTGGAAGGCGATACGAGGATCCTTACCTTTACCATGAACCCATGCATGGAATGAAGCGACCGTTTTAC ATGACTGATCCCGAACCTGATTATGGAGAACCAAGTAGATACCGCCCTCGAATGGATTATAATCATCTTGCTGTTTCATACAATGGACCACGTCCTGGTG AAGATACTTATCCGAACAGAGGTGCTCCTTACCCGCATGATTATTATGGCTCTGATCAAGCATGTAAAGTAACTCAAGAGGAACAATTTCTGCTGCTTGA TGTCAGAGTTGAGATAGCCCTTGTTCTCTATCCTCTAGGGGTTAACGCAGAGACTTGCCTTGCCGCTGCTTTCTCCCTTCATCGACTCTCAATCAAAATC CTGTTCATTAGCGGCGGAACCCAAAACATTGATAAGTTCCTACTGATTTCAAATTCTTGGTGTAAGCTTGGTATTTGGTTGTTAATTTTGGAATCATTGC TTGTTTTTGAACCTGATCCTTCGCCACTGAACTGCTACTGCATTGGTATCATGGGTGACAAGAAGAAGAAGACGTTCATGTTCATAAGGCTGATATCAGC AGCTGGAACAGGCTTCTTTTACGTGAAGAAGAAGAGCTCAAAGAAAGTGATGGAGAAGCTTGAGTTCCGCAAGTATGATCCCAGGGTCAATCGCCATGTT CTTTTCACCGAGGCAAAGATGAAATGA
AA sequence Show only first row Show all	>Lus10033990 pacid=23154885 polypeptide=Lus10033990 locus=Lus10033990.g ID=Lus10033990.BGIv1.0 annot-version=v1.0 MRTQSRNAVAKRRMERKLATESVAPKASELVLQPGSPAKSSVQTTGEEVEPPSPTVVPDAKADQSEDEDAQVSNGTESIIMEARPTPPRTRRVVKKVVRM VKKRQLKVITTPTPQGNIYEEVTESVKVETEDITKVEMTGTESVDAGKTKDSDGEENVEKSSEKEENMVNLEPVGENKSQMEGGEHVGKEEEIVVRSPEA AQPTPDARAGTIEKAQITLELDLSAKVTHKADLVNPGGSNETQVIGANASSVQDEDAHDEVYEGPLDLEAVKKVPKETMEGSLADKGQCEADAVIPEGSN ETEVVGGSTSSAVQGECAHDQVYGDRLDLGGPVEDKLIEDDNVECAGDVMVLEEEHKQLTAVAEDRKTKKEYEIFVGGLGMDATEEHVKKAFEYVGPVVE VRLYKDLSTDKKTGYAFVRFSNKEHVKRALSEMKNPVICGKRCATAPSEDNDTLFLGNICNTWTKEAIRQRLKDYGIERVESINLVSDAQHEGRSRGFTF LEFSCHADAMLAYKRLQKPDAVFGHPERTAKVAFAEPISEPDPQVMAEVKTVFLDGLPLNWDEDHVRERVKGYGEITRIALSRNMRTAKRKDFGFVDFST HGAAISCINGINHAETSGGNSMTKVRARLSNPLPKTQAVKGGMRGGFLIGRVGRADTVNTSRSGRGVARSGRQFNSTNIQRGRGFYQSGRDQTYRVAPED YGLNNRYDIFHGRTPERGGRRDPLGGSYQHADRGVPFAGPYGSNVNRTWHDVHEGGPSDQIHFRRQPFSEEAFDGPYGGRRYEDPYLYHEPMHGMKRPFY MTDPEPDYGEPSRYRPRMDYNHLAVSYNGPRPGEDTYPNRGAPYPHDYYGSDQACKVTQEEQFLLLDVRVEIALVLYPLGVNAETCLAAAFSLHRLSIKI LFISGGTQNIDKFLLISNSWCKLGIWLLILESLLVFEPDPSPLNCYCIGIMGDKKKKTFMFIRLISAAGTGFFYVKKKSSKKVMEKLEFRKYDPRVNRHV LFTEAKMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10033990 [exp]	0	1
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10027113 [exp]	1.7	0.8173
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10000187 [exp]	2.4	0.8461
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	4.6	0.8021
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	5.3	0.8167
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	6.0	0.8339
AT2G26840			unknown protein		Lus10036059 [exp]	6.5	0.8023
AT3G19650			cyclin-related (.1)		Lus10011420 [exp]	8.1	0.7905
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10022387 [exp]	8.1	0.8162
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10040535 [exp]	12.5	0.7701
AT3G48425			DNAse I-like superfamily prote...		Lus10019483 [exp]	17.1	0.7844

Compare expression of checked genes

Lus10033990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.