Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18830 600 / 0 SBP ATSPL7, SPL7 squamosa promoter binding protein-like 7 (.1.2.3) AT2G47070 114 / 7e-26 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G76580 108 / 7e-24 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G20980 103 / 3e-22 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT3G60030 98 / 9e-21 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT3G15270 81 / 3e-17 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT1G27360 84 / 8e-17 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G02065 82 / 2e-16 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT2G33810 77 / 2e-16 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G53160 77 / 4e-16 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012782 [exp] 1374 / 0 AT5G18830 669 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10038043 [exp] 107 / 1e-23 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10009984 [exp] 107 / 2e-23 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 100 / 2e-21 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10028181 [exp] 86 / 7e-18 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10016275 [exp] 84 / 2e-17 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10042882 [exp] 84 / 6e-17 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10023818 [exp] 84 / 7e-17 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 84 / 1e-16 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197000 [exp] 739 / 0 AT5G18830 657 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.010G026200 [exp] 723 / 0 AT5G18830 664 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.008G098600 [exp] 130 / 6e-31 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.010G154000 [exp] 127 / 8e-30 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.002G002400 [exp] 124 / 6e-29 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.005G258700 [exp] 121 / 5e-28 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.014G114300 [exp] 120 / 9e-28 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.002G188700 [exp] 112 / 4e-25 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.008G097900 [exp] 87 / 1e-17 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.014G057700 [exp] 85 / 1e-17 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10033993 pacid=23154803 polypeptide=Lus10033993 locus=Lus10033993.g ID=Lus10033993.BGIv1.0 annot-version=v1.0 ATGGAACCACCATCTCCTCCTCCCTCTGCTCTGCTCGACGATCGAATGGAATCTCTGCATCACAATCAACTTCCGTCGGTCACCGAATCGTATCCTCCTT CCTCATCATCTCCCGGCGCATGGGAATTGACTGATCTCCTCGACTTCAACATAGACGATGATTTCCCTCTCCCATTCGACTCCCTTGATCTTCCCGACGA CAATCCTGATTCCTACTTTTCCCCGCACGATAATCCGCCTACTGAGCGGGTGAGGAAACGGGACCCGAGGTCCACCTGCTCCAATTTCTTGGCCGGTAGG GTTCCCTGCGCCTGCCCCGAGCTGGATGAGAAGTTGGAGCAGGAGGAAGGAGTCCCCGGCAAGAAGCGGGCCCGGGTGGCTCGGGGTGGACCCGGGATGT ACAGGTGTCAGGTTCCTGGCTGCGAGGTGGACATCACCGAGCTTAAAGGATACCATCGGCGGCATAGGGTGTGTTTGCGCTGCGCGAATGCGACAGCTGT TAAGATTGATGGAGAGACCAAGAGATACTGTCAGCAGTGTGGCAAGTTTCATTTGCTTCCGGATTTTGACGAAGGAAAACGGAGCTGTAGACGGAAATTA GAGCGTCACAACAATAGGAGGCGTAGAAAGTCACTTAATAGTAATGTTTCTACGAATGAAGGGACTATCATGGATAATTTGCAAGCTGAAGATGCTGCTT GCAATGGCGAGACTGAAAAAGACGGTTTATCCTTACAGATTGTGGGGAAGGAAGCTCTTGTTGTGATTGAAGATGGGCCTGGATTCCAGTCTGAATCCCA GAAGGTGAACAGCGATAGTGGTGCTGCTTCAGCTGAAACACTATTTGATGCTGGAAATGATGATTCTGGTGGAAAATATGATTCCAAGCTTTCACGCTCG CCTTCTAATTTTGACAACGGAACTGCTTACTCATCGCTGTGTCCAACAGGTCGGGTCTCATTCAAGCTTTATGATTGGAATCCAGCAGAGTTTCCAAGAC GGCTTCGTCACCAAATTTTCCAGTGGTTGGCTAGTATGCCGGTTGAGTTGGAAGCATATGTTCGTCCTGGTTGCACGAATTTGACAGTGTTTGCTGCAAT GCCAACACGCATGTGGGCAAAGTTGCTCAAAGATCCTCTATCGTATGTGCAAAAGTTTGTTCTTGTTCCTGGGTCAATGCTGTCTGGAAAAGGCCGTATG ATTGTTTATCTGGATAATTTGATGTTCCGAGTTTTGAAAGGTGGAACTTCCGTGATGCAACTCAATGTTGGAACGCAATCCCCCAGGCTTCACTACGTTC ATCCAAATTGCTTTGAGGCTGGGAAGCCAATGGAGTTTGTTGCTTGTGGAAGCAATCTATTCCAAAGCAATTTCCGGCTGCTGGTGTCATTTGACGGGAA GTATCTGGCTTATGATTCCTGTGTTGGGTTACCTAGTGGTGGTGTTGATGGGAATGCTAGCAGAGACCATCAGTTGTTCAAGATATCTATTCCTCATGTT GATCCTAATATCTTTGGTCCTGCATTTATTGAGGTTGAAAATGGGAGTGGTCTATCTAACTTCATTCCTGTGCTCGTTGGCGACAGACAGATCTGCTCCG AAATGGAAGTAATACAGCAAAGATTAGAGGTTTTGAATAATGTTAGGGGCTTTCACTGTGAGATTTCACAAACCAGGCAAAGAATACTCTCTGAATTAAT CGTGGACGTAGCATGGTTATTGAAGGCACCTTCCCAGGATAGAATTAGGCAAACGGCATCATCACTACAGATCCAAAGATTTGTTTCTTTGTTGCAGTTT TTGATACAGCATGACTCGACTTTCATTTTGAGAAAAGTTTTGTCCAATCTGATGATCACAGTTGGTGCAATAAGTTCAGAAAATGTCATCAATGGCAATA CGGATGCTGAGGCCAAGCTTTTAAAACAGTATATGGATGAAGCCAGTCGTTTTCTTCACCAAAAAGCAAATAGAAGCAATGGTTTAGCTTTAGCGCCAGA GCATTCTTCGTCCGGGGAGTGTGATGTTGATAGATGTTGCCCTCGAACAGATTTTCGGTTGGTTGCTGCATTGTCCGATGAGGACATAGAGAATAGAACG AATAACCTTTTGAGATTATCAGAAGGTTCACGTCCTGATGTTAGAAGTGACGAGATGCCGCTCCTAAACAACGGAGATGTAGTGATGGATGTGAAGCTGG TGAAGGAAAGGCCAGGGAAGTCGTGCAGTGTGATATTGTCGAACAAAGTGCCGAAGTCGCGGGCTGCAATGTTTGTAATTGCTACAGTTGCAGTGTGTGT GGGAGTGTGCGCAGTGCTACTCCATCCTAACAGTGTTGGCAAAATGGCGGTATCCATTCGTAGCTGCTGGACTGAAAGTAGATACTAA
AA sequence Show only first row Show all	>Lus10033993 pacid=23154803 polypeptide=Lus10033993 locus=Lus10033993.g ID=Lus10033993.BGIv1.0 annot-version=v1.0 MEPPSPPPSALLDDRMESLHHNQLPSVTESYPPSSSSPGAWELTDLLDFNIDDDFPLPFDSLDLPDDNPDSYFSPHDNPPTERVRKRDPRSTCSNFLAGR VPCACPELDEKLEQEEGVPGKKRARVARGGPGMYRCQVPGCEVDITELKGYHRRHRVCLRCANATAVKIDGETKRYCQQCGKFHLLPDFDEGKRSCRRKL ERHNNRRRRKSLNSNVSTNEGTIMDNLQAEDAACNGETEKDGLSLQIVGKEALVVIEDGPGFQSESQKVNSDSGAASAETLFDAGNDDSGGKYDSKLSRS PSNFDNGTAYSSLCPTGRVSFKLYDWNPAEFPRRLRHQIFQWLASMPVELEAYVRPGCTNLTVFAAMPTRMWAKLLKDPLSYVQKFVLVPGSMLSGKGRM IVYLDNLMFRVLKGGTSVMQLNVGTQSPRLHYVHPNCFEAGKPMEFVACGSNLFQSNFRLLVSFDGKYLAYDSCVGLPSGGVDGNASRDHQLFKISIPHV DPNIFGPAFIEVENGSGLSNFIPVLVGDRQICSEMEVIQQRLEVLNNVRGFHCEISQTRQRILSELIVDVAWLLKAPSQDRIRQTASSLQIQRFVSLLQF LIQHDSTFILRKVLSNLMITVGAISSENVINGNTDAEAKLLKQYMDEASRFLHQKANRSNGLALAPEHSSSGECDVDRCCPRTDFRLVAALSDEDIENRT NNLLRLSEGSRPDVRSDEMPLLNNGDVVMDVKLVKERPGKSCSVILSNKVPKSRAAMFVIATVAVCVGVCAVLLHPNSVGKMAVSIRSCWTESRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10033993 [exp]	0	1
AT3G09410			Pectinacetylesterase family pr...		Lus10024398 [exp]	3.9	0.9135
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	4.5	0.9376
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	7.7	0.9031
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	9.6	0.9216
AT1G68260			Thioesterase superfamily prote...		Lus10031959 [exp]	15.7	0.9010
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	15.9	0.9129
AT5G46600			Aluminium activated malate tra...		Lus10022030 [exp]	16.1	0.8766
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	19.1	0.8852
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	19.6	0.8834
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	23.1	0.9012

Compare expression of checked genes

Lus10033993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.