Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26750 367 / 2e-124 EXT-like extensin-like, hydroxyproline-rich glycoprotein family protein (.1) AT3G59100 52 / 6e-07 ATGSL11 glucan synthase-like 11 (.1) AT1G05570 51 / 1e-06 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT2G31960 50 / 4e-06 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT2G13680 49 / 7e-06 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT5G13000 47 / 2e-05 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012781 [exp] 771 / 0 AT4G26750 390 / 2e-133 extensin-like, hydroxyproline-rich glycoprotein family protein (.1) Lus10037471 [exp] 49 / 3e-06 AT2G31960 258 / 2e-78 glucan synthase-like 3 (.1.2) Lus10003917 [exp] 46 / 2e-05 AT2G31960 231 / 4e-69 glucan synthase-like 3 (.1.2) Lus10039199 [exp] 45 / 0.0001 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10013744 [exp] 45 / 0.0001 AT1G05570 2981 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10003920 [exp] 44 / 0.0003 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10002097 [exp] 44 / 0.0003 AT2G13680 1916 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10037469 [exp] 44 / 0.0003 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10020751 [exp] 43 / 0.0005 AT3G59100 934 / 0.0 glucan synthase-like 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G082000 [exp] 499 / 6e-176 AT4G26750 373 / 1e-126 extensin-like, hydroxyproline-rich glycoprotein family protein (.1) Potri.003G214200 [exp] 50 / 2e-06 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G230000 [exp] 49 / 6e-06 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G058300 [exp] 49 / 1e-05 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G012200 [exp] 48 / 1e-05 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G203500 [exp] 46 / 5e-05 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 45 / 0.0001 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04652 [flax] [poplar] Vta1 Vta1 like
Representative CDS sequence Show only first row Show all	>Lus10033994 pacid=23154871 polypeptide=Lus10033994 locus=Lus10033994.g ID=Lus10033994.BGIv1.0 annot-version=v1.0 ATGGCGAGCGACAACGAACCAGCAAAGCTTCTGCTGCCGTACCTGCAACGAGCTGATGAGCTGCAAAAGCATGAACCCCTCGTTGCGTACTATTGTCGAT TATATGCAATGGAGAGGGGACTGAAGATTCCTCAGAGTGATCGTACTAAGGTCACCAATTCTCTCCTTGTTTCCCTCATGAAGCAACTCGAGAAGGATAA GAAGTCGGTGAATTTGGGACCTGAAGATAACTATTATCTGGAGGGATTCGCACAGAATGTCTTTTCAAAAGCCGATAAACAAGACCGTGCAGGACGAGCT GACTTGAGCACAGCGAAGACATTTTATGCAGCTAGCATTTTCTTTGAGATACTTAATCAGTTTGGCCCCCTCCAGCCTGAACTTGAGCAGAAGCAGAAGT ATGCAGTTTGGAAGGCTGCCGATATAAGGAAAGCACTGAAAGAAGGAAGGACACCCAAGGCAGGCCCTCCTGTTGACGATGACGATCTAACGGTTCCATC AAGTGAATTTACCAATGACCACGATACCGGGGGGACTTCAGCATTGCAGTCAGACTCTAATCCATCGTCCCAGTTTCATGATCAAGTTAGCAGTCACCAT TCAGCCGACATGCCACAATCATCTCAGTCACATGATCAGGTTAACAATCAACATCCTTATCAGTCATATAATTCATTAGACATGCAGCATTCGACACAAG TTCCACCTCAACCTCCACAGTCATATGACTCCGTTAACAACCAGCATTCTGGAAGTGCCATGCCTTCACCTTCTCCTTATGCTGGTGCTGCCTACCCCCA AGATTTTAATCCATCTGCTGGCGATAGATCTGAGAACCCCACTTATTCTCAGCCGCACCACCACCACGGATCCTACTCACAAGAACCTCAGCCCCACGTG CCTCAAAATTACCCAGTTCATGATAATTCCTCCTTCTCTTACCCAAATTTCCAGTCTTATCCAAGTTTCACGGACACCAGCCTTCCATCTTTGCCATCTC ATTATCCTTCTTATTATCAAGGGTCTGATCCCGCAGCATACAGCAACTCTCAGTCCACTCCACCTGCTACAAGTTATCCAGCAGGACTACAGCATAGTTC AAGCAACAGCAGAAGGATGACTGCAGATCCCTTGCCAACAACTCCTACAGAAACATACCAGTACGACAGCAATTACCAGCCACCACCTGAGAAAATTGCA GAGGCACATAAAGCGGCAAGGTTTGCAGTTGGAGCCCTGGCATTCGATGAAGTATCTGTTGCGGTGGAGCACCTAAAGAAGTCTCTCGAGCTGCTGACAA AGCCATAA
AA sequence Show only first row Show all	>Lus10033994 pacid=23154871 polypeptide=Lus10033994 locus=Lus10033994.g ID=Lus10033994.BGIv1.0 annot-version=v1.0 MASDNEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSDRTKVTNSLLVSLMKQLEKDKKSVNLGPEDNYYLEGFAQNVFSKADKQDRAGRA DLSTAKTFYAASIFFEILNQFGPLQPELEQKQKYAVWKAADIRKALKEGRTPKAGPPVDDDDLTVPSSEFTNDHDTGGTSALQSDSNPSSQFHDQVSSHH SADMPQSSQSHDQVNNQHPYQSYNSLDMQHSTQVPPQPPQSYDSVNNQHSGSAMPSPSPYAGAAYPQDFNPSAGDRSENPTYSQPHHHHGSYSQEPQPHV PQNYPVHDNSSFSYPNFQSYPSFTDTSLPSLPSHYPSYYQGSDPAAYSNSQSTPPATSYPAGLQHSSSNSRRMTADPLPTTPTETYQYDSNYQPPPEKIA EAHKAARFAVGALAFDEVSVAVEHLKKSLELLTKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	0	1
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10024043 [exp]	1.7	0.9006
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10009987 [exp]	6.7	0.8404
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	13.2	0.8523
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	14.3	0.8901
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10025416 [exp]	15.0	0.8507
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011098 [exp]	16.3	0.8747
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10017366 [exp]	21.0	0.8690
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	21.0	0.8406
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10034106 [exp]	25.7	0.8392
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10025284 [exp]	27.8	0.8563

Compare expression of checked genes

Lus10033994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.