Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18840 410 / 2e-141 Major facilitator superfamily protein (.1) AT2G48020 345 / 4e-116 Major facilitator superfamily protein (.1.2) AT1G54730 338 / 3e-113 Major facilitator superfamily protein (.1.2.3) AT3G05150 333 / 4e-111 Major facilitator superfamily protein (.1) AT3G05160 250 / 9e-80 Major facilitator superfamily protein (.1.2) AT5G27350 252 / 2e-79 SFP1 Major facilitator superfamily protein (.1) AT3G05165 251 / 2e-79 Major facilitator superfamily protein (.1.2.3.4.5) AT1G75220 248 / 4e-78 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G08930 246 / 7e-77 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G19450 245 / 1e-76 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012780 [exp] 560 / 0 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10027976 [exp] 353 / 1e-119 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 355 / 2e-116 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 343 / 4e-115 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 342 / 3e-114 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 324 / 1e-107 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035354 [exp] 323 / 6e-107 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10008179 [exp] 321 / 8e-107 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 303 / 1e-99 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026500 [exp] 452 / 8e-158 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 359 / 3e-121 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 338 / 4e-113 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027500 [exp] 333 / 5e-111 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 275 / 2e-88 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 268 / 1e-85 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 267 / 2e-85 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 262 / 3e-83 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.007G024300 [exp] 260 / 1e-82 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 246 / 2e-77 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10033995 pacid=23154791 polypeptide=Lus10033995 locus=Lus10033995.g ID=Lus10033995.BGIv1.0 annot-version=v1.0 ATGGCGATAGGGAATTTGAAGGATGTGGAGAGTGGTGAGATTACCTATGGGCTGGACGACCTGGAGGAGCCATTGTTGGTGGACGGGAAATTAGTTGTGA GCTCTGGTGGGGAGGATGAATCAAGTATTGAAGATAGTAATGATGGTTCGTCGTCATCCATTGGGATGGTTCTGCTCAGCACTGCTGTCGCCGTTTGTGG GTCTTTCGAGTTCGGCTCTTGTGTTGGTTACTCTGCACCTGCTCAATCTGCAATCAGGGAAGACCTCCATCTCTCTTTGCCTCAGCTCATGATAGTCGTT GGAGCATCCACTGCCTTCTTACTTGGCTCAGTCATAACATGGAGATCTCTAGCACTAACTGGAATTCTTCCCTGCATATGCCTGCTTACTGGTCTCATCA TCGTTCCTGAATCTCCTAGATGGCTGGCGAAAGTTGGCCGCGAGAAGGAATTCCAAGTTGCGTTGCAGAGACTCCGTGGCAAAGGCACTGATATCACCCT TGAAGCTGTTGAAATTCAGCAAAATATCGAGGCACTTCAAAACCTTCCAAAAGCAAGTATGGCTGATCTGTTCCATCCCAAGTACATCCGTTCCACAATT ATTGGAGTTGCACTCATGGTATTCCAGCAGTTTTGTGGGATTAATGGCATTGGCTTCTACGCAAGTGAAACATTTGCCTCAGCAGGGCCTTCATTGGCGA AAATTGGAACCATAGCGTATGCATGTATCCAAGTCCCAATCACTGTAGCAGGAGCAATGCTGATGGACAAATCTGGAAGAAGACCACTCATAATGGTTTC TGCAACTGGTACATTCCTAGGCTGCTCCATGGCTGGTGCTTCTTTCTTCTTCAAGGTGTACATTTCTGCATTCTCAATTGGAATGGGAGCAGTGCCCTGG GTGATCATGTCTGAGATCTTCCCCATAAACATGAAGGGAGTGGGAGGAAGCCTGGTGGTGCTGGTGAATTGGCTGGGCGCATGGGCAGTCTCGTTCACAT TCAATTTCTTAATGAGCTGGAGTTCCCCGGGGACATTCTTCCTCTACTCCGGCTTCTCGATCCTGACGATCCTGTTCGTCGCTAAATTCGTTCCCGAAAC CAAAGGCAAAACTTTGGAAGAGATTCAGGAATCTATCAACAACCCGTAG
AA sequence Show only first row Show all	>Lus10033995 pacid=23154791 polypeptide=Lus10033995 locus=Lus10033995.g ID=Lus10033995.BGIv1.0 annot-version=v1.0 MAIGNLKDVESGEITYGLDDLEEPLLVDGKLVVSSGGEDESSIEDSNDGSSSSIGMVLLSTAVAVCGSFEFGSCVGYSAPAQSAIREDLHLSLPQLMIVV GASTAFLLGSVITWRSLALTGILPCICLLTGLIIVPESPRWLAKVGREKEFQVALQRLRGKGTDITLEAVEIQQNIEALQNLPKASMADLFHPKYIRSTI IGVALMVFQQFCGINGIGFYASETFASAGPSLAKIGTIAYACIQVPITVAGAMLMDKSGRRPLIMVSATGTFLGCSMAGASFFFKVYISAFSIGMGAVPW VIMSEIFPINMKGVGGSLVVLVNWLGAWAVSFTFNFLMSWSSPGTFFLYSGFSILTILFVAKFVPETKGKTLEEIQESINNP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18840			Major facilitator superfamily ...		Lus10033995 [exp]	0	1
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	2.4	0.9529
					Lus10017917 [exp]	4.4	0.9669
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	5.3	0.9591
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015418 [exp]	5.3	0.9367
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020480 [exp]	6.7	0.9432
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10030879 [exp]	9.3	0.9590
AT2G43590			Chitinase family protein (.1)		Lus10035624 [exp]	10.7	0.9322
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	12.0	0.9567
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	17.5	0.9554
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	17.5	0.9518

Compare expression of checked genes

Lus10033995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.