Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03020 614 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 91 / 1e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 77 / 3e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 66 / 4e-11 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G61210 66 / 5e-11 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 61 / 9e-10 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 61 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54520 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G60940 57 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012779 [exp] 929 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10042682 [exp] 602 / 0 AT4G03020 749 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10029621 [exp] 537 / 0 AT4G03020 658 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 84 / 2e-17 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 80 / 5e-16 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 76 / 7e-15 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 75 / 2e-14 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 71 / 4e-13 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001046 [exp] 69 / 3e-12 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026800 [exp] 664 / 0 AT4G03020 676 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G136000 [exp] 624 / 0 AT4G03020 741 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G197200 [exp] 540 / 0 AT4G03020 534 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 87 / 1e-18 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 67 / 4e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 66 / 1e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 66 / 1e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 65 / 7e-11 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 64 / 1e-10 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.T125206 [exp] 63 / 3e-10 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10033996 pacid=23154719 polypeptide=Lus10033996 locus=Lus10033996.g ID=Lus10033996.BGIv1.0 annot-version=v1.0 ATGAGGAGGCATAAATTTTTGCGAGCTTGTGACGAGAGAGAAAATGCTGAAGCGGAATGGAATAGAGCCGGCGGAGTTGAAGGTGGAGAGAGCTCCAATC AATTTGATCACGAGATTGTGCAGCTGACAAAGCTTAGGTCAGAGCCGCATGAACTCTTCACTCGACACTCGTTCGCAGGCGGCGTAAGGCCCAGAGCCCC TGTCTCCACCTTGAAGATGTTGGCCGGCAGGGAGGCTAATTGCTCAGGAAGAGGAAGATTCTCATCGGCCGATGGTTGTCATGTTCTGAGCAGGTATTTG CCTGTCAATTCCCCTGTTGAGGTCGACAACACGAGGAGCCGGGCTTATGTGTCTCAGTTCTCATCTGATGGATCGCTTTTCATCGCTGGCTTTCAGGGGA GCCACATTAGGATATATAATGTGGAGAAGGGATGGCAAGTTCATAAGAATATCATGGCCAGGAGCTTGCGCTGGACTATTACTGATACTTGTCTTTCACC CGATCGGCGATATCTTGTGTATGCGAGTCTGTCGCCTATGGTACATATCGTTGATGTTAGTTCATCTACAACCGAGTCACTTGCGAACGTTACGGAACTC CATGATGGTTTGGATTTTTCTAGCTCCGATTATGATGATGAAGATGAATTTGGTATCTTCTCTATAAAATTTTCAACTGACGGAAAAGAGCTGGTTGCAG CAACTAGTGATGACTCGATATATGTTTATGACCTTCAAGCCAATACTCGGACCCTCCATATCCCCGCACACCAGTCTGATGTGAATACAGTATGCTTTGC TGATGAAACTGGCCATGTTATTTACTCTGGAAGTGATGACTACCTATGTAAGGTTTGGGACAGGCGGTGTTTTAACAGCAGAGGGCAAGCAGCAGGGGTA TTGATGGGGCATCTGGAAGGTGTCACGTTCATCGACAGTCGTGGAGATGGGCGTTATTTGATTTCGAATGGTAAAGATCAGACCACGAAGCTCTGGGATA TTAGAAAGATGACCTCAAATGCAATCTACTCTCCAAGAATAAGAGATCCAGACTGGGACTACAGATGGATGGAATACCCGCAGCAGGCGAAAACATTGAA GCATCCTCGTGATCAGTCGTTGGCTACTTACGGTGGTCATTCAGTTCTACGAACCCTAATACGATGCTACTTCTCCCCCGAATACAGTACAGGTAAAAAG TACATCTACACGGGGTCTAGCGACTGTTTGGTTTATATATATGATTTGGTGAGTGGGGACCGAGTGGGTTGCTTGGATTACCATCAAGGTCCAGTGAGGG ATTGCAGTTGGCACCCGGTGTATCCAATGCTGGTAAGCTCTTCGTGGGATGGACGCATCGTGAAATGGGAGTTCCCTGGTCCTCCCTATGATGATGAATC GCCTGTAGTAGTACCAATATCTGCAAGGAAGAAGAAAAGTAGAAGGCACTTCATATACTAA
AA sequence Show only first row Show all	>Lus10033996 pacid=23154719 polypeptide=Lus10033996 locus=Lus10033996.g ID=Lus10033996.BGIv1.0 annot-version=v1.0 MRRHKFLRACDERENAEAEWNRAGGVEGGESSNQFDHEIVQLTKLRSEPHELFTRHSFAGGVRPRAPVSTLKMLAGREANCSGRGRFSSADGCHVLSRYL PVNSPVEVDNTRSRAYVSQFSSDGSLFIAGFQGSHIRIYNVEKGWQVHKNIMARSLRWTITDTCLSPDRRYLVYASLSPMVHIVDVSSSTTESLANVTEL HDGLDFSSSDYDDEDEFGIFSIKFSTDGKELVAATSDDSIYVYDLQANTRTLHIPAHQSDVNTVCFADETGHVIYSGSDDYLCKVWDRRCFNSRGQAAGV LMGHLEGVTFIDSRGDGRYLISNGKDQTTKLWDIRKMTSNAIYSPRIRDPDWDYRWMEYPQQAKTLKHPRDQSLATYGGHSVLRTLIRCYFSPEYSTGKK YIYTGSSDCLVYIYDLVSGDRVGCLDYHQGPVRDCSWHPVYPMLVSSSWDGRIVKWEFPGPPYDDESPVVVPISARKKKSRRHFIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03020			transducin family protein / WD...		Lus10033996 [exp]	0	1
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	4.5	0.7731
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10033426 [exp]	5.5	0.8134
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	6.7	0.8191
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	6.9	0.7788
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	12.7	0.8186
AT4G15840			BTB/POZ domain-containing prot...		Lus10002874 [exp]	21.2	0.7410
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	21.6	0.8100
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	22.5	0.8072
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10001718 [exp]	23.6	0.7743
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	24.2	0.7981

Compare expression of checked genes

Lus10033996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.