Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18850 93 / 1e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026900 [exp] 105 / 9e-31 AT5G18850 101 / 1e-29 unknown protein Potri.008G197300 [exp] 103 / 6e-30 AT5G18850 110 / 3e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033997 pacid=23154650 polypeptide=Lus10033997 locus=Lus10033997.g ID=Lus10033997.BGIv1.0 annot-version=v1.0 ATGGCATCGCCGGCAGCTAAGATGGCGTTCCGTGTGGTGGTAGCAGTGATGGTGATAACAGTAGTGTTCTACGTGGGTCGTCCATTGTACTGGAAGATCT CGGCCACCGTCCAAGAGATCCGCGAAAACAAGCGCACCGTCAAGCAAGGGATTTCGCAGATCGTTTACGAAGCGCAGAAATCGGTGGGGTGGTTCCACGA CGAGTCCGATCCGGGGGTGGTGCGGCGGGCCACTAATCGGAAGCTGCTTCTGCTAGTCGAGAGAGACATCAGTGCGAATTCTACTAAAGGTCCCGGCCGT GAACTCCAAATAAGCTCCCAGCTGCAAGTCGTGACCTCGAGCTGCCATATGATCAGCGGATCTCCCAGTCCCTCTCCCGGGGTCTCTGGAATTTAG
AA sequence Show only first row Show all	>Lus10033997 pacid=23154650 polypeptide=Lus10033997 locus=Lus10033997.g ID=Lus10033997.BGIv1.0 annot-version=v1.0 MASPAAKMAFRVVVAVMVITVVFYVGRPLYWKISATVQEIRENKRTVKQGISQIVYEAQKSVGWFHDESDPGVVRRATNRKLLLLVERDISANSTKGPGR ELQISSQLQVVTSSCHMISGSPSPSPGVSGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18850			unknown protein		Lus10033997 [exp]	0	1
AT1G67350			unknown protein		Lus10037020 [exp]	1.0	0.9053
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Lus10012372 [exp]	1.7	0.8884
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Lus10042565 [exp]	3.2	0.8947
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10011053 [exp]	4.6	0.8631
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	5.7	0.8852
AT1G61600			Protein of unknown function (D...		Lus10035379 [exp]	7.1	0.8850
AT1G08315			ARM repeat superfamily protein...		Lus10039500 [exp]	7.5	0.8706
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	8.7	0.8699
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	8.8	0.8706
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	9.9	0.8724

Compare expression of checked genes

Lus10033997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.