Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18860 860 / 0 NSH3 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18890 417 / 8e-138 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18870 275 / 2e-87 NSH5 nucleoside hydrolase 5, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT2G36310 51 / 2e-06 NSH1, URH1 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) AT1G05620 47 / 3e-05 NSH2, URH2 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012778 [exp] 1127 / 0 AT5G18860 1091 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10041249 [exp] 693 / 0 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10041248 [exp] 219 / 4e-61 AT5G18860 362 / 5e-117 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10003251 [exp] 55 / 1e-07 AT2G36310 540 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10022062 [exp] 49 / 7e-06 AT1G05620 506 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10042608 [exp] 49 / 7e-06 AT1G05620 521 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197400 [exp] 970 / 0 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197500 [exp] 875 / 0 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.007G144600 [exp] 49 / 9e-06 AT1G05620 524 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01156 [flax] [poplar] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Lus10033998 pacid=23154663 polypeptide=Lus10033998 locus=Lus10033998.g ID=Lus10033998.BGIv1.0 annot-version=v1.0 ATGCAATTCCATAAGAATTCCTGGTTGGTGATCATATTGTTGTTGAGTACATCAATTTTTGGATCTGGGATCCATGTTGTGGAAGAGGATTCCAAGCCGC TTCGGATTCTTTTGGATGCTGATGTTGATACAGATGACTTCTTTGCTCTTTTGTACCTCCTGAAGCTTAAACAATCAGATTTTGCAGTTGAGGCAGTGAC AATTAGTGCCAATGCATGGAGTGATGCAGGACATGCTGCGAATCACATCTATGACATCCTTTACATGATGGGTCGTGACGATGTTTCAGTTGGCGTTGGA GGAGAAGGTGGAGTTCTTGATGATGGCACTATTCTGCCTAATGTTGGGGGATACCTTCCCTTAATTGAACAGGGTGTGACAACAGCAGGAAGTTGCAGAT ATAGACAGGCAATTCCAGTTGGTGCTAGGGGCAGACTCGACACCGATTCGAACTTTGGCCTCCGGAGAGCATTCCTTCCTCAGGGAAATAGGAGATATCT CCCTTTTCGACAGCCTACGTCACAGCAAGTGCTGATAGAGAAAGTATCTGCAGGTCCAATTACCATACTAATGACAGGAGCTCATACAAATATAGCCATC TTTCTGATGAACAACCCGCATTTGAAGAAGAACATCGAGCATATTTACATCATGGGAGGTGGTGTGAGGTCGAAAAACCCTGCAGGCTGTTGTCCTAAGA ATTCCAGTACTTCTTCTTCTTGCCAGCCAGGGCAGTGCGGTGATCCTGGAAATCTGTTTACTTCCTACACAAGTAACCCGTATGCTGAATTCAACATATT TGGAGACCCTTTTGCTGCATACCAGGTTATTCACTCAGGGGTGCCAATCACCCTTGTGGGTTTGGATGCAACGAATACGATTCCAGTGTATAAGGAGTTC TTTGAGGTGTTTGAACAGAGACAAGAAACATATGAGGCACAGTACTGCTTCGAGTCCTTGAAAATGGCGCGGGACACTTGGTTGGATAACCAATTCTACT CAAGCTACTTCATGTGGGATTCTTTCACTTCTGGTGTGGCAACTTCTATCATGCTCAATCAACATAGCAAAAACGGGGAGAATGAGTTTGCCGAAATGGA GTACATGAACATAACTGTGGTGACATCGGACGAACCTTACGGATATCACGATGGCTCGAATCCATTCTTTGATTTCCGCCAACTTCCAAAATTTGGTCTG GAGAAAGGCGGGATTCATAGTGGCCACGTCCAGACATGCCCTAGAGATCCATTCTGCTTTGTCAAGGATGGCAAAGGGAGATGCCAGGATGGCTTTACAA AGGAGACAACAGGTCCTGATTCTGTACGAGTTCTTGTTGCTACTAGAGCAAAGCCTGCTACAGATCCTAATAGTCAACTAAAGAAAGCATTTTTCAAGAG CTTCTTGGATGTACTGAACCAACCTCAACAGAGTGGAAAGTTCAATTTCACAGACCAATTTCCTTACTACAGAAAGGTTCTTCACAAGCCACGAGATTTT GGAACCAAAACACCGGGGAAAGCTGTCGTCTTTGACATGGATATGAGTCCTGGAGATTTCTTGGCCCTCTTATATCTTCTTAAAGTACCTGCAGAAATCA TCAATCTAAAGGCTATCATAGTAAGCCCAACTGGCTGGGCAAATGCTGCTACAATAGATGTCGTTTATGATTTACTCCACATGATGGGTCGTGATGACAT ACCGGTTGGGCTCGGAGAAGTGATTGGGACAAACCAGTCTGATCCAATGTTCCCTTCTTCTGTTGGAGGCTGCAAGTATGTCAAGGCCATCCCTCATGGC AGCGGTGGATTTATAGATTCAGACACTCTATTCGGGCTTGCTCGAGATTTGCCTCGAAGCCCCAGAAGGTACACCGCAGAGAACTCTGTTGCGTTCGGTG CCCCTCGAAATACTGATCATCCTGAACTGAGGCAGGATACATTCTTGGGAGAAATTCTCGGAGCAGTAGTTTTGGCTGGTGATCCTTCTTTACTGAGGCC AATCTTGCAAGCTAAATCCATCAGGATCCTTGCTGATGGCGACGAGTCAACAGATGGCCGAATCTTAATTGAAGAAAATCAAGGTAAGTCAGTGAAAGTG TTGGAAGGTCTAGACCGAAATGCATACTACCAGGTTTTTGCAAATCAACTAGGGGGAAAGAAGCAATCAGCTGTTATAGGAAGCTTTCAGGAGCAGAAAA GAATGTGGAGCAGGCCGCCAGTATAA
AA sequence Show only first row Show all	>Lus10033998 pacid=23154663 polypeptide=Lus10033998 locus=Lus10033998.g ID=Lus10033998.BGIv1.0 annot-version=v1.0 MQFHKNSWLVIILLLSTSIFGSGIHVVEEDSKPLRILLDADVDTDDFFALLYLLKLKQSDFAVEAVTISANAWSDAGHAANHIYDILYMMGRDDVSVGVG GEGGVLDDGTILPNVGGYLPLIEQGVTTAGSCRYRQAIPVGARGRLDTDSNFGLRRAFLPQGNRRYLPFRQPTSQQVLIEKVSAGPITILMTGAHTNIAI FLMNNPHLKKNIEHIYIMGGGVRSKNPAGCCPKNSSTSSSCQPGQCGDPGNLFTSYTSNPYAEFNIFGDPFAAYQVIHSGVPITLVGLDATNTIPVYKEF FEVFEQRQETYEAQYCFESLKMARDTWLDNQFYSSYFMWDSFTSGVATSIMLNQHSKNGENEFAEMEYMNITVVTSDEPYGYHDGSNPFFDFRQLPKFGL EKGGIHSGHVQTCPRDPFCFVKDGKGRCQDGFTKETTGPDSVRVLVATRAKPATDPNSQLKKAFFKSFLDVLNQPQQSGKFNFTDQFPYYRKVLHKPRDF GTKTPGKAVVFDMDMSPGDFLALLYLLKVPAEIINLKAIIVSPTGWANAATIDVVYDLLHMMGRDDIPVGLGEVIGTNQSDPMFPSSVGGCKYVKAIPHG SGGFIDSDTLFGLARDLPRSPRRYTAENSVAFGAPRNTDHPELRQDTFLGEILGAVVLAGDPSLLRPILQAKSIRILADGDESTDGRILIEENQGKSVKV LEGLDRNAYYQVFANQLGGKKQSAVIGSFQEQKRMWSRPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10033998 [exp]	0	1
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	1.4	0.9286
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	4.0	0.9152
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015284 [exp]	8.8	0.8999
AT4G36210			Protein of unknown function (D...		Lus10024307 [exp]	9.3	0.8409
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10043387 [exp]	12.4	0.8477
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	14.5	0.8826
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	18.0	0.8915
AT5G42710			unknown protein		Lus10016315 [exp]	18.8	0.8907
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	19.3	0.8773
AT5G38900			Thioredoxin superfamily protei...		Lus10034368 [exp]	24.7	0.8393

Compare expression of checked genes

Lus10033998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.