Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18910 565 / 0 Protein kinase superfamily protein (.1) AT3G05140 432 / 9e-146 RBK2 ROP binding protein kinases 2 (.1) AT5G35960 412 / 1e-138 Protein kinase family protein (.1) AT5G65530 387 / 2e-128 Protein kinase superfamily protein (.1) AT5G10520 380 / 9e-126 RBK1 ROP binding protein kinases 1 (.1) AT2G18890 325 / 4e-105 Protein kinase superfamily protein (.1.2) AT5G57670 309 / 1e-96 Protein kinase superfamily protein (.2) AT1G77280 255 / 2e-74 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 246 / 2e-71 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 234 / 1e-69 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012776 [exp] 1025 / 0 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 427 / 2e-143 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10008192 [exp] 422 / 3e-142 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10035949 [exp] 400 / 8e-133 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10041248 [exp] 392 / 5e-127 AT5G18860 362 / 5e-117 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10012727 [exp] 353 / 1e-113 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10025713 [exp] 341 / 9e-111 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10006957 [exp] 316 / 3e-102 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10019990 [exp] 321 / 1e-100 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027301 [exp] 557 / 0 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136300 [exp] 453 / 1e-154 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.013G028100 [exp] 437 / 2e-147 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.008G197800 [exp] 393 / 1e-130 AT5G18910 348 / 2e-115 Protein kinase superfamily protein (.1) Potri.007G011700 [exp] 393 / 1e-130 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.006G166600 [exp] 340 / 2e-111 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.018G091200 [exp] 333 / 1e-108 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.018G096100 [exp] 335 / 2e-106 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 333 / 2e-105 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.005G182800 [exp] 270 / 4e-80 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034000 pacid=23154857 polypeptide=Lus10034000 locus=Lus10034000.g ID=Lus10034000.BGIv1.0 annot-version=v1.0 ATGTGGGGCCGATGTCGAATTTTCTCACTGCTGTGGGCGGTTTGGCACGAGCGTAATGAGCGTGTCTGGAAGATGAAAGCGACGCATGCTAGGGGGATTG TGCAAGGAGCTGAGGAGATGTTGAGCAGCTGGCGGTTGGCTCAAGCTCGTTTCAGGAGTAGTGCTCCAGCTCGGATTGATACTGCTTGTAGGCGCTGGCA TCCTCCGAGTCTTCCAGCCCGTAAGTGCAACGTTGACGCAGCCAGCCTGCTTCGCGGACCAAGGAGAGATGGGGATCGGAATCTGCCTACGAGATCACAA TGGAAACCTTATCCGCTACAAGACCTTGAGGAGGCCAGGGGGTCAATGCAGCAAGGAGAGCGAGGCCATGGCTCTCTAACTCTTTGTATCTCAGACTTGG GATCTCTAGTTGCGGATGAGTACGAGGAGGATAATGCTCAGAGGCAAGCTCAAGCTATATCCCAAGCAGATGCAGAGCCATCTGCAACAGGCGTATCAAA AGATAGCTTTATTGTTAGTGTAGAATCCGATGCAGCTCCCAATGCAACGGGAAGTCCCAAAACCAGCCCAGCAGCGGCCACCACATCAGCATCTGATGTG GCTGAGCTCCCAACCACCTTCGGTGCGGACCCTCTTTCTGTAGTTCCATTGATATGGCGGGACTTTTTCAAGGCCTTCAAGAAGGGACCCACACCTCTCA TGCGTAAGCAAAACATTCCTAGCTTGATAAGGACGGTCCCTAAACTCACTAGGAGGAAGAGCAAAAGGATCAGGGAAGGCATGGTTCCAGCATTAAGCTC CCCTCTCGATGCGGAACTCTGTTACCTCAAGCCCTCCTGGAAGAATTTTGCACTTTGGGAGTTGCTTGCTGCTACCGATAATTTCAGCCGGGATAAATTG ATTGGAGAAGGTGGGTATGCTGAAGTTTACAAAGGGCAATTGTCTGATGGGCAATTTGTTGCCATAAAAAGACTAGTTAGAGGCTCTTCCCCTGAAGAGA TGACCATGGATTTTTTATCTGAACTTGGAATTATCTGCCATGTTGACCACCCTAATATTGCTAAATTGATTGGGTATGGAGTTGAAGGAGGAATGCACCT TGTTCTTCAATTGTCCATCAATGGAAGTGTGTCGTCTTTACTTTATGGGCCAAGGGAACAATTGAGTTGGGCAGTCAGGTACAAAATCGCTTTTGGAACT GCTGAAGGGCTTTTATATCTTCATGAGGGTTGCCAGAGGAGAATTATCCATAAAGATATCAAAGCTGCTAATATTTTGCTTACAGAAGATTTCGACCCTC AGATTGCAGATTTCGGGCTTGCAAAATGGTTACCGGAGAATTGGACTCATCACACTGTTTCAAAAATTGAAGGCACATTTGGCTATCTACCACCCGAGTT CTTCATGCATGGCATCGTAGACGAAAAAACAGATGTTTATGCTTATGGGGTACTGTTATTAGAGCTCATCACAGGAAGACAAGCTTTAAGTAGTTCCCAA CAAAGCCTTGTTATGTGGGCCAAACCACTGCTAATGCAGAACAAGATCAGCGACCTAGTTGATCCGGTTCTCGGTCAAACTTACAACTTAGAGCAGATGG AACGCGTTGTTTGTTTAGCTGCAATGTGCGTGGAACAGGCCTCGGTTCAGAGGCCCCAAATGAGCCGGGCAGTGGAGATTCTGATGGGAGATGAAAGCAC ACTGGAAGAGGTAAAACGGAGGCAAAAGTCTAAACTACAGAGGACATATTCGGAGGAGCTTTTCGATGCGGATGAGTACAACTCGACGAGGTACTTATGT GATCTCAACATACATATAGAAGACCTTTTGGAACCAGATGATGCAGAGACTTTCGAAGAATGCAGCTCGGTGAAATCGCCACCGTCAGATGAAGAGGGGA GACCCCCCAACCACGATGCAGAGAAATCGAAGGACGAGGTGGAGAAACCGAAAGATGAAGGGAAACCGAATGAAGCAGAAGGGAAATCAAATGAAGCAGA AGACAAATAA
AA sequence Show only first row Show all	>Lus10034000 pacid=23154857 polypeptide=Lus10034000 locus=Lus10034000.g ID=Lus10034000.BGIv1.0 annot-version=v1.0 MWGRCRIFSLLWAVWHERNERVWKMKATHARGIVQGAEEMLSSWRLAQARFRSSAPARIDTACRRWHPPSLPARKCNVDAASLLRGPRRDGDRNLPTRSQ WKPYPLQDLEEARGSMQQGERGHGSLTLCISDLGSLVADEYEEDNAQRQAQAISQADAEPSATGVSKDSFIVSVESDAAPNATGSPKTSPAAATTSASDV AELPTTFGADPLSVVPLIWRDFFKAFKKGPTPLMRKQNIPSLIRTVPKLTRRKSKRIREGMVPALSSPLDAELCYLKPSWKNFALWELLAATDNFSRDKL IGEGGYAEVYKGQLSDGQFVAIKRLVRGSSPEEMTMDFLSELGIICHVDHPNIAKLIGYGVEGGMHLVLQLSINGSVSSLLYGPREQLSWAVRYKIAFGT AEGLLYLHEGCQRRIIHKDIKAANILLTEDFDPQIADFGLAKWLPENWTHHTVSKIEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALSSSQ QSLVMWAKPLLMQNKISDLVDPVLGQTYNLEQMERVVCLAAMCVEQASVQRPQMSRAVEILMGDESTLEEVKRRQKSKLQRTYSEELFDADEYNSTRYLC DLNIHIEDLLEPDDAETFEECSSVKSPPSDEEGRPPNHDAEKSKDEVEKPKDEGKPNEAEGKSNEAEDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18910			Protein kinase superfamily pro...		Lus10034000 [exp]	0	1
AT5G36000			unknown protein		Lus10012627 [exp]	1.4	0.8405
AT1G12950		RSH2	root hair specific 2 (.1)		Lus10036853 [exp]	6.3	0.7910
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	11.4	0.7777
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10031127 [exp]	20.3	0.7583
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009620 [exp]	22.2	0.7198
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017270 [exp]	22.8	0.7348
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	25.1	0.7346
					Lus10020595 [exp]	25.5	0.7060
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	29.7	0.7087
AT4G10320			tRNA synthetase class I (I, L,...		Lus10025306 [exp]	30.0	0.6819

Compare expression of checked genes

Lus10034000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.