Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15545 298 / 6e-100 unknown protein AT1G56080 159 / 5e-46 unknown protein AT1G16520 157 / 2e-45 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012775 [exp] 439 / 3e-155 AT4G15545 383 / 2e-133 unknown protein Lus10031771 [exp] 160 / 7e-46 AT1G16520 400 / 1e-139 unknown protein Lus10031193 [exp] 142 / 3e-39 AT1G16520 352 / 5e-121 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027400 [exp] 342 / 2e-117 AT4G15545 355 / 2e-122 unknown protein Potri.005G097600 [exp] 149 / 7e-42 AT1G16520 338 / 1e-115 unknown protein Potri.007G066900 [exp] 105 / 6e-26 AT1G16520 383 / 2e-133 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034001 pacid=23154784 polypeptide=Lus10034001 locus=Lus10034001.g ID=Lus10034001.BGIv1.0 annot-version=v1.0 ATGGTGGGGGAAGAAGAAGAAGCGGGTAGTGACGGTGGTGGTGGCAGTGGCGGTGGCGCCACTTTCGGCCTTCCCGAGGAGGTATTGTCAGTCCTTCCTT CTGATCCTTTCCAACAGCTCGACGTGGCCCGCAAAATCACCTCCATTGCTCTCTCCACACGTGTCTCCGCTCTCGAGTCCGAATCCGCCTCCCTCCGCTC CCAGCTCCTCGACCGTGACAACCTCATCGCCGACCTTCACTCCCAGATTGATTCCCTCGCCGCCGAACTCTCCTCCGCCTCCGACAAGCTCTCCCTCGCC GACCAAGACAAGGATAGCTTGCTTAGAGGCAATGCTGCACTCTCCAATACTGTCAGGAAGCTCCACCGCGATGTTGCAAAGCTTGAAGTTTTCAGGAAGA CGCTTATGCAGTCGCTTCAAGAGGACGATGACAGCTCCGCCAGAAGCAGTGGTGGAGGAGGAGGAGGAGGAGCTGAAGGAGCTCAGCAAATAATTGCTAA GCCAACACCTAACGATGATGATACCGTGTTGCCACCTTTGAGATCGTCCTCCACAGCGAGTCAGTACTCTGAAACGGGCAACTCTTATGCTGAAGATCGC AACTCGGATGCATCGAGACCTGGTGTGTCGATGTCGATGCTGCTAGCGTCTCAGACAAGCACACCCAAGCTGACGCCACCCGGTTCACCTCCAAGTGTAT CGGCTTCTGGATCGCCTACGAGATCGTCTAAACCCGTCTCGCCAAGACGAAGTACCATGTCATTTTCTACTTCCAGAGGGATGATGGACACAGCTTCACA AACTGGGAGAGGCAGAGTTGATGGGAAGGAATTCTTCCGCCAAGTTAGGAGCCGGTTGTCTTACGAGCAGTTTGGTGCGTTTCTGGCTAATGTCAAGGAA TTGAACTCCCACAAGCAAAGCAAAGAGGAAACGTTGAGAAAGGCCGAGGAAATATTTGGCCCAGAAAGCAAGGATCTCTACATCATATTTGAAGGACTAA TCTCTAAAAAGTAG
AA sequence Show only first row Show all	>Lus10034001 pacid=23154784 polypeptide=Lus10034001 locus=Lus10034001.g ID=Lus10034001.BGIv1.0 annot-version=v1.0 MVGEEEEAGSDGGGGSGGGATFGLPEEVLSVLPSDPFQQLDVARKITSIALSTRVSALESESASLRSQLLDRDNLIADLHSQIDSLAAELSSASDKLSLA DQDKDSLLRGNAALSNTVRKLHRDVAKLEVFRKTLMQSLQEDDDSSARSSGGGGGGGAEGAQQIIAKPTPNDDDTVLPPLRSSSTASQYSETGNSYAEDR NSDASRPGVSMSMLLASQTSTPKLTPPGSPPSVSASGSPTRSSKPVSPRRSTMSFSTSRGMMDTASQTGRGRVDGKEFFRQVRSRLSYEQFGAFLANVKE LNSHKQSKEETLRKAEEIFGPESKDLYIIFEGLISKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15545			unknown protein		Lus10034001 [exp]	0	1
AT4G15545			unknown protein		Lus10012775 [exp]	1.0	0.9382
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021438 [exp]	1.4	0.8496
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	5.3	0.8429
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10018201 [exp]	5.7	0.8250
					Lus10024718 [exp]	6.5	0.8134
AT5G36930			Disease resistance protein (TI...		Lus10004719 [exp]	6.7	0.8342
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	8.5	0.8229
AT3G18770			Autophagy-related protein 13 (...		Lus10005812 [exp]	9.5	0.8139
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10040706 [exp]	15.0	0.8131
AT2G47210	MYB		myb-like transcription factor ...		Lus10034713 [exp]	15.1	0.8339

Compare expression of checked genes

Lus10034001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.