Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21570 50 / 8e-08 unknown protein AT4G32020 49 / 6e-07 unknown protein AT2G25250 42 / 5e-05 unknown protein AT4G02040 42 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012773 [exp] 307 / 6e-107 AT3G21570 67 / 7e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027500 [exp] 173 / 1e-54 AT4G02040 55 / 1e-09 unknown protein Potri.008G198000 [exp] 117 / 1e-32 AT4G02040 56 / 9e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034002 pacid=23154730 polypeptide=Lus10034002 locus=Lus10034002.g ID=Lus10034002.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGATCTTGAGGCCTCGGGATTGTTTAACCGAACGGGTCAGAGTCTCTCCTTGTCACCGGAGAAACTTTCAATACCATGGCCACGCTAACC CCAGCGCCAACGTCGCCTCTAATTATGCTAATTATTCTAGCAGTAGCTCGTTTAATCCAAGGTTGAATCGAAAGCCGGCCGCTGGTGGTGGCCATCGGCC CGACCAGAAGAAGCGTCATCAGCCAGAGCCGTCGATCTCCAAGAGATCTACCTCCGCCGATGACTTGAGGATCTCTAGGAGCCAGAGCCAAAGCCATGGC AACCACCACAGGCACAACCACAGCCACAGCCTGGTTATGGATAAGGTAACGATTCTCCGTCGTGGCGAGTCGCTTGATTCGAGGATCGTTGTCGGTGGTG AAACCACGACGTCGTTTGTGATGGTTGCGAACGGTACGGAAAGGATCGGATCGGGACCCGAGGTGGTTCCGAGGCAGATTAGAGTTGTCGACGGGAAGCC TCCTCAGCCGCAGGTTTCCAACAGAAAGGCGGACGTGTACGCCGGATCGGCGTTCGCGGTGTCTCCTGAGCCCAGCGACCTTCCTTTGCCTTCTTTCTCG AAGAAGAAGCAGGTATCGGTTGACGACTCGGCCACCAGAGACCTCCGGCGTCTGCTCCGGCTGGATCTTTGA
AA sequence Show only first row Show all	>Lus10034002 pacid=23154730 polypeptide=Lus10034002 locus=Lus10034002.g ID=Lus10034002.BGIv1.0 annot-version=v1.0 MATEILRPRDCLTERVRVSPCHRRNFQYHGHANPSANVASNYANYSSSSSFNPRLNRKPAAGGGHRPDQKKRHQPEPSISKRSTSADDLRISRSQSQSHG NHHRHNHSHSLVMDKVTILRRGESLDSRIVVGGETTTSFVMVANGTERIGSGPEVVPRQIRVVDGKPPQPQVSNRKADVYAGSAFAVSPEPSDLPLPSFS KKKQVSVDDSATRDLRRLLRLDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21570			unknown protein		Lus10034002 [exp]	0	1
AT3G21570			unknown protein		Lus10012773 [exp]	3.0	0.9169
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	3.5	0.9200
AT3G03280			unknown protein		Lus10013490 [exp]	4.1	0.9234
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	5.3	0.9160
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	6.3	0.8912
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10032848 [exp]	6.3	0.9139
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	8.1	0.8891
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015897 [exp]	8.5	0.8954
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10014729 [exp]	9.6	0.8607
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	10.6	0.8972

Compare expression of checked genes

Lus10034002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.