Plant FIBer expression Database

Lus10034003 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21530 487 / 7e-170 DNAse I-like superfamily protein (.1)
AT2G48030 399 / 2e-135 DNAse I-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012772
[exp]
832 / 0 AT3G21530 504 / 2e-177 DNAse I-like superfamily protein (.1)
Lus10027979
[exp]
437 / 5e-150 AT2G48030 479 / 3e-167 DNAse I-like superfamily protein (.1)
Lus10008177
[exp]
431 / 3e-147 AT2G48030 486 / 5e-170 DNAse I-like superfamily protein (.1)
Lus10029630
[exp]
424 / 1e-144 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1)
Lus10042675
[exp]
419 / 7e-143 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G198100
[exp]
627 / 0 AT3G21530 506 / 1e-177 DNAse I-like superfamily protein (.1)
Potri.014G136900
[exp]
503 / 2e-175 AT2G48030 516 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0530 DNase_I-like PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence
>Lus10034003 pacid=23154799 polypeptide=Lus10034003 locus=Lus10034003.g ID=Lus10034003.BGIv1.0 annot-version=v1.0
ATGGCATCTGAAAGGGATACTCTGAGGGATCAGAGCTTAAAACTTCTCCTTGGATCAGAAGAGGAGTTCCTTCACAAGGGTTCCAAGATGTTGAGTACAG
TGAGCAAGAAACTGAGGCTGATATGGTCCAGGATGAGGTGGCTGATATGCAAGCGCCCCAGGCCAAAAGTGATAATCCGAAGGCTGGGGAAGAAGATGGT
CTCCAAGGATCGGTGTGAATGGGAGCCCGGATCCAGGAGATCATCCATACTGAGTCGTCTCAGTCCACAGAAGCCGATTCGAGTTGCCACTTTCAATGTT
GCCATGTTCCATCTGGCACCTGCGGTTCCAAAATCCGAAGATATGGTGAAGTTGGGACAAGAAGAGATAGAGGAGGAGGATTTCAGTTTTCGAAACTACC
ATCTGAAGAGCATCCTCAAGCAATCTCCACTACATGAACAGCAGCTGTCTGCAGAAAAGGGCGCGGTGGTGTCAAGATCGAAACAGAAAGTATCTATCAA
CCTTCCGGACAACGAGATTTCATTGGCACACGGGAAGTTCTTGAGCCTTGTGGAGGAAGAAAGAGAGGGATCGTCGAGAATCATCGCCAGCAGAAACTAC
AGGAGCAGTGTGGTGATGAGGTCGCCAGTTTCTTTGCCTGCATGTTATAACAACACGGCCAAGTCGAGAAGTAGTGAAGAGGATTCAACGAGCAGCCGAA
GGAGAAGTATCTTCGAAGTACTCCGCGAAGTTGGGGCGGACGTTTTGGCCCTACAAGATGTGAGGGCAGATGAAGAGAAGGATATGAGACCGTTATCTGA
TCTGGCTGCTTCCTTGGGAATGAAGTACGTGTTTGCTGAGAGCTGGGCTCCGGAGTACGGGAATGCGATCCTGTCGAAATGGCCTATCAGGAGATGGAAA
GTTCAGAAGATAGCCAACGATCAAGATCACAGGAACGTGCTCAAGGCCACAATTGATGTGCCGTGGGCTGGAGAAGTTGACTTCTACTGCACTCAACTCG
ACCATTTGAACGAGAATTGGCGAATGAAGCAGATCAACGCGATCATGCAGTCAAACGACTCCCCCCACGTATTGATCGGAGGTTTGAATTCCCTTGATGG
ATTGGATTACTCCTCGGAGAGATGGATGGACATTGTCAGGTACTATGAAGATATAGGGAAGCCAACACCAAGGATGAAAGTAATGGAGTTTCTAAAGGCT
AAAGGCTACACAGATTCGAAAGAATATGCAGGAGAATGCGAGCCGGTGGTGATCATTGCCAAAGGCCAAAATGTTCAAGGGACATGTAAGTATGGGACGC
GAGTCGATTACGTTCTAACATCGCCAGACTCACGACTTGAGTTTGTTCCGGGATCATACTCAGTGATATCGTCAAAGGGTACTTCCGATCACCACATAGT
TAAGGTTGACATCAGAAAAGCAGGGGAGAGTTGCCATACTAAGGGCCAAGGCAAGAAAGCGAAACAGAGAATTGTGAGAATAACTGAACCTTTGTGTTCT
AGAGGAATTTGGAAGGTATAG
AA sequence
>Lus10034003 pacid=23154799 polypeptide=Lus10034003 locus=Lus10034003.g ID=Lus10034003.BGIv1.0 annot-version=v1.0
MASERDTLRDQSLKLLLGSEEEFLHKGSKMLSTVSKKLRLIWSRMRWLICKRPRPKVIIRRLGKKMVSKDRCEWEPGSRRSSILSRLSPQKPIRVATFNV
AMFHLAPAVPKSEDMVKLGQEEIEEEDFSFRNYHLKSILKQSPLHEQQLSAEKGAVVSRSKQKVSINLPDNEISLAHGKFLSLVEEEREGSSRIIASRNY
RSSVVMRSPVSLPACYNNTAKSRSSEEDSTSSRRRSIFEVLREVGADVLALQDVRADEEKDMRPLSDLAASLGMKYVFAESWAPEYGNAILSKWPIRRWK
VQKIANDQDHRNVLKATIDVPWAGEVDFYCTQLDHLNENWRMKQINAIMQSNDSPHVLIGGLNSLDGLDYSSERWMDIVRYYEDIGKPTPRMKVMEFLKA
KGYTDSKEYAGECEPVVIIAKGQNVQGTCKYGTRVDYVLTSPDSRLEFVPGSYSVISSKGTSDHHIVKVDIRKAGESCHTKGQGKKAKQRIVRITEPLCS
RGIWKV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G21530 DNAse I-like superfamily prote... Lus10034003
[exp]
0 1
AT2G28930 APK1B protein kinase 1B (.1.2.3) Lus10016537
[exp]
3.7 0.9487
AT4G23895 Pleckstrin homology (PH) domai... Lus10032387
[exp]
4.9 0.9276
AT4G35110 Arabidopsis phospholipase-like... Lus10026277
[exp]
9.6 0.9438
AT1G13130 Cellulase (glycosyl hydrolase ... Lus10006461
[exp]
10.4 0.9452
AT1G29050 TBL38 TRICHOME BIREFRINGENCE-LIKE 38... Lus10039559
[exp]
12.0 0.9291
AT4G26060 Ribosomal protein L18ae family... Lus10027625
[exp]
16.4 0.9361
AT3G21630 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINA... Lus10035302
[exp]
16.5 0.9263
AT3G26380 Melibiase family protein (.1) Lus10006467
[exp]
17.1 0.9396
AT4G10380 AtNIP5;1, NIP5;... NOD26-LIKE MIP 8, NOD26-LIKE M... Lus10033268
[exp]
17.2 0.8786
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10027940
[exp]
21.7 0.9140

Lus10034003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.