Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15520 346 / 1e-122 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT5G15390 49 / 5e-07 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT2G19870 47 / 5e-06 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012771 [exp] 432 / 1e-156 AT4G15520 348 / 2e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10032993 [exp] 48 / 2e-06 AT5G15390 403 / 1e-140 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10011129 [exp] 48 / 3e-06 AT2G19870 472 / 1e-161 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10043030 [exp] 45 / 2e-05 AT2G19870 473 / 7e-162 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198200 [exp] 366 / 2e-130 AT4G15520 347 / 9e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.001G150900 [exp] 53 / 4e-08 AT4G17610 1934 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.004G122300 [exp] 47 / 2e-06 AT5G15390 430 / 9e-152 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF00588 [flax] [poplar] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Lus10034004 pacid=23154779 polypeptide=Lus10034004 locus=Lus10034004.g ID=Lus10034004.BGIv1.0 annot-version=v1.0 ATGGGGATCGAGAGCTACGTGATAGTACACAACATAGCCAAGCGGCACAACGTCGGCACGCTTGCCCGGAGCGCCACGGCGTTCGCCGTCACGGATCTCA TTCTCATCGGCCGCCGCGACTTCAACTCCTTCGGCAGCCACGGCTCCACCTGTCACGTCCGCTTCCGCCACTTCCATTCTCTCCTCGAAGCCCGCCACTT CCTCAAGGAGAAAGATTGTGATATATGTGGGGTTGAGATAGCAGAGGGTGCTCTCCCTGTAAATGAGCATCCCTTTAAAAAGAGCACAGCTTTCCTTCTG GGTAACGAGGGAACAGGACTTTCTGCCAAAGAATGTGAGATCTGCGACTTCTTTGTCTACATTCCGCAGTACGGATGTGGGACTGCTTCATTGAATGTTA CTGTCGCTGCTTCCATTGTTCTTCACCATTTTGGAGTTTGGGCAGGATTTTCTGAGCGGACTCGTGACGGGAACAAGTTTATCGTAGCTGAGAGACCACA GAAGCAAGGAAAATACTGCACTGAAACGGAAGAATCGATCACTGAAGAGAGGAAGTGTAAAAGGGAAAGTGCAGCTAATGGCGGATTCTTTGAGGAGGCA GAGAGAGGAGATTCTTCTGCTAACCTTCTTGATGCCTTGTTTATAGAGGCTTGA
AA sequence Show only first row Show all	>Lus10034004 pacid=23154779 polypeptide=Lus10034004 locus=Lus10034004.g ID=Lus10034004.BGIv1.0 annot-version=v1.0 MGIESYVIVHNIAKRHNVGTLARSATAFAVTDLILIGRRDFNSFGSHGSTCHVRFRHFHSLLEARHFLKEKDCDICGVEIAEGALPVNEHPFKKSTAFLL GNEGTGLSAKECEICDFFVYIPQYGCGTASLNVTVAASIVLHHFGVWAGFSERTRDGNKFIVAERPQKQGKYCTETEESITEERKCKRESAANGGFFEEA ERGDSSANLLDALFIEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10034004 [exp]	0	1
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	5.7	0.7984
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	7.5	0.7896
AT3G22430			unknown protein		Lus10041205 [exp]	9.9	0.7936
AT5G47610			RING/U-box superfamily protein...		Lus10025563 [exp]	12.2	0.7662
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	15.0	0.7647
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10026614 [exp]	20.0	0.7264
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	27.3	0.7525
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10009713 [exp]	29.1	0.7440
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	30.0	0.7394
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	34.0	0.7312

Compare expression of checked genes

Lus10034004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.