Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15530 1485 / 0 PPDK pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012770 [exp] 1883 / 0 AT4G15530 1541 / 0.0 pyruvate orthophosphate dikinase (.1.2.3.4.5.6) Lus10006147 [exp] 207 / 1e-62 AT4G15530 168 / 1e-49 pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027800 [exp] 1578 / 0 AT4G15530 1592 / 0.0 pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF02896 [flax] [poplar] PEP-utilizers_C PEP-utilising enzyme, PEP-binding domain CL0179 [flax] [poplar] ATP-grasp PF01326 [flax] [poplar] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain CL0364 [flax] [poplar] Leu-IlvD PF00391 [flax] [poplar] PEP-utilizers PEP-utilising enzyme, mobile domain
Representative CDS sequence Show only first row Show all	>Lus10034005 pacid=23154869 polypeptide=Lus10034005 locus=Lus10034005.g ID=Lus10034005.BGIv1.0 annot-version=v1.0 ATGATGAAGGGAGTGGTACTCAGGATTGCCCCGGCTCCTCCGGCCGATGTCACGGCGTCGAAACAGAGGCTCTTCTTTAACGGGAAGTACGCTGATCAAA GGATCAATAATGATCTTCTCTTCAGACGCCAATCGATTCCTGGCGGAGTTTACTGCCAGCTGGACCGCACTTCATTTGGTGCCGGCCTAGTCACCGGTAA GCCCTCTGCTACTGTGCGTGATGTTAGTGTTCAAGTTCTGAGCAGTCCAATTTCCGAGGAGACTGCGCCCACGATCAAGAAGAGGGTTTTCACGTTTGGG AAAGGGAAGAGTGAAGGCAACAAGAGCATGAAGTCATTGCTTGGAGGGAAAGGAGCCAACTTGGCGGAAATGGCGACAATAGGCCTCTCAGTCCCGCCAG GCCTGACAATCTCAACAGAGGCATGCCAAGAATACCAGCACAACGGGAAGAATCTCTCCAATTCGTTGTGGGAAGAAGTATTGGAAGGATTGAAAATTGT GGAGAATGATATGGGAGCCACTCTTGGCGATCCTTCCAAACCCCTTCTCCTCTCTGTTCGATCCGGAGCCGCTATATCAATGCCTGGAATGATGGACACT GTCCTCAATCTGGGACTCAATGATGAGGTTGCATCCAGTTTAAGCGCCGAGAGTGGAGAGCGGTTCGCTTACGACTCATACCGGCGCTTCCTAGACATGT TTGGCGGTGTGGTGATGGGGATTCCGCACTCCTTCTTCGAAGAGAAATTGGAAGGGATGAAGGAAGCGAAAGGAGCGAGGCTCGACACCGATCTGTCAGC TTCCGATCTGAAAGAGCTGGTGGAGCAGTACAAGCAAGTGTACGTTGAATCGACCGGAGATAAGTTCCCTTCGGATCCCAAGCAGCAACTGCTCTTGGCG GTGAAGGCGGTGTTCGATTCGTGGGACAGCCCAAGAGCGAACAAGTACAGGAGCATAAACCAGATCACGGGGCTGAAAGGAACTGCAGTGAATGTTCAGT GTATGGTGTTTGGGAACATGGGGAACACCTCCGGAACAGGGGTTCTCTTCACCAGAAACCCAAGTACCGGAGAGAACAAGCTCTACGGCGAGTTCTTGAT CAATGCTCAGGGGGAAGACGTTGTCGCCGGAATTCGAACCCCGGAGGATATAAGCGCGATGAAAGATTGTATGCCGGAGGCTTACGAGGAGCTCGTGGAG AATTGTGAGATACTAGAGCGGCATTACAAGGACATGATGGACATCGAGTTCACAGTGCAAGAGAACAGGTTGTGGATGTTGCAGTGCAGGGCAGGTAAAC GTACCGGAAAAGGCGCGGTAAAGATAGCGGTGGATATGGTGCACGAAGGGCTCATCGATACTCGTACTGCTGTCATGAAAGTCGAGCCGCAACATCTTGA TCAACTTCTTCACCCACAATTTGAGGATCCTAGCGGTTACAAGGACAAGGTGTTGGCCACCGGACTACCTGCTTCCCCAGGGGCAGCGGTGGGGCAGGTG GTGTTCAGCGCAGAAGAAGCAGAAGCATGGCACGCACAAGGGAAGAGCGCCATCCTCGTCAGAACAGAGACAAGTCCAGAGGACGTTGGAGGAATGCACG CCGCCGCAGGAATCTTGACTGCTAGAGGAGGAATGACGTCTCACGCCGCCGTTGTGGCTCGCGGCTGGGGCAAATGCTGCGTCTCCGGATGCCCTGATCT CCGAGTCAACGATGCCGAGAGGGTTGTGGCGATTGGAGATGAATTAATCAGGGAAGGAGAGGAATTGATCAGAGAAGGAGAATGGTTGTCTTTGAACGGA TCAACTGGAGAAGTGATACTAGGGAAGCAGCCGTTAGCTCCTCCTGCTCTCAGTGGCGATTTGGAGACGTTCATGTGCTGGGCTGATGAGATACGGCGGA TTAAGGTGATGGCGAATGCTGATACACCTGAAGATGCTTTGACTGCTAGAAACAATGGTGCTCAAGGGATTGGACTTTGCAGGACGGAACATATGTTTTT TGCTTCTGATGAAAGGATCAAGGCTGTGAGGAAGATGATAATGGCAGAGACACAAGAGCAAAGGAAAGCAGCGTTGGACCTGTTGTTGCCTTACCAACGA TCTGACTTCGAGGGCATCTTTCGTGCCATGGATGGTCTTCCAGTGACGATCAGGTTGTTGGATCCTCCCCTTCATGAGTTTCTCCCAGAGGGAGACTTGG AACAGATCGTTGAGGAGCTAACAACTGATACAGGAATGACTGAAGATGAAGTCTTCGCCAGGATTGAGAAACTGTCTGAAGTGAATCCAATGCTTGGCTT CCGAGGATGCAGGCTTGGAATCTCGTATCCAGAACTGACAGAAATGCAAGCTCGAGCAATTTTCCAGGCTGCAATTTCGATGAGCCAACATGGAATCAAA GTTTTCCCTGAGATCATGGAATTGGGACATCAGATTGGCTTGATACGAGATGTGGCAAACAAGGTGTTCTCTGAGACAGGTATCACCTTGACTTACAAGG TTGGAACCATGATTGAGATTCCCAGAGCTGCTTTGGTCGCTGATGAGATAGCGAAAGAAGCAGAGTTCTTCTCGTTCGGAACCAACGACTTGACACAGAT GACATTCGGGTATAGCAGAGATGATGAGTACAAGTTCCTTCCCACATACTTGGCGCAGGGAATCCTTCAGAGCGACCCATTTGAGGTTCTTGACCAGAAA GGAGTTGGGCAACTCATCAAGATGGCCACTGAGAAAGGCCGCTCTGCTCGTCCCAGCTTGAAGGTGGGAATATGCGGAGAGCACGGTGGGGAGCCTTCAT CAGTAGCCTTCTTTGCAGAAGCTGGATTGGACTATGTTTCATGTTCACCCTTCAGGGTTCCAATTGCAAGGCTAGCTGCAGCTCAAGTGGCAGTGTGA
AA sequence Show only first row Show all	>Lus10034005 pacid=23154869 polypeptide=Lus10034005 locus=Lus10034005.g ID=Lus10034005.BGIv1.0 annot-version=v1.0 MMKGVVLRIAPAPPADVTASKQRLFFNGKYADQRINNDLLFRRQSIPGGVYCQLDRTSFGAGLVTGKPSATVRDVSVQVLSSPISEETAPTIKKRVFTFG KGKSEGNKSMKSLLGGKGANLAEMATIGLSVPPGLTISTEACQEYQHNGKNLSNSLWEEVLEGLKIVENDMGATLGDPSKPLLLSVRSGAAISMPGMMDT VLNLGLNDEVASSLSAESGERFAYDSYRRFLDMFGGVVMGIPHSFFEEKLEGMKEAKGARLDTDLSASDLKELVEQYKQVYVESTGDKFPSDPKQQLLLA VKAVFDSWDSPRANKYRSINQITGLKGTAVNVQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDISAMKDCMPEAYEELVE NCEILERHYKDMMDIEFTVQENRLWMLQCRAGKRTGKGAVKIAVDMVHEGLIDTRTAVMKVEPQHLDQLLHPQFEDPSGYKDKVLATGLPASPGAAVGQV VFSAEEAEAWHAQGKSAILVRTETSPEDVGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCPDLRVNDAERVVAIGDELIREGEELIREGEWLSLNG STGEVILGKQPLAPPALSGDLETFMCWADEIRRIKVMANADTPEDALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAETQEQRKAALDLLLPYQR SDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEQIVEELTTDTGMTEDEVFARIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAISMSQHGIK VFPEIMELGHQIGLIRDVANKVFSETGITLTYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDEYKFLPTYLAQGILQSDPFEVLDQK GVGQLIKMATEKGRSARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	0	1
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	1.0	0.9817
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10026429 [exp]	2.2	0.9045
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	2.4	0.9251
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	4.2	0.9084
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036039 [exp]	5.7	0.9055
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	6.0	0.8828
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	6.3	0.8848
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	6.9	0.8965
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	7.0	0.8947
AT3G03770			Leucine-rich repeat protein ki...		Lus10005689 [exp]	7.1	0.8745

Compare expression of checked genes

Lus10034005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.