Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06290 1093 / 0 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT3G54380 189 / 5e-52 AtSAC3C yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) AT2G39340 58 / 5e-08 AtSAC3A yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012769 [exp] 2810 / 0 AT3G06290 1033 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10024110 [exp] 180 / 2e-48 AT3G54380 412 / 1e-142 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Lus10041609 [exp] 161 / 3e-42 AT3G54380 429 / 3e-149 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Lus10001973 [exp] 61 / 1e-08 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10030305 [exp] 59 / 4e-08 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028200 [exp] 1467 / 0 AT3G06290 1155 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.001G035700 [exp] 185 / 2e-50 AT3G54380 457 / 3e-160 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Potri.008G047700 [exp] 60 / 2e-08 AT2G39340 880 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.010G213700 [exp] 59 / 4e-08 AT2G39340 845 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10034008 pacid=23154686 polypeptide=Lus10034008 locus=Lus10034008.g ID=Lus10034008.BGIv1.0 annot-version=v1.0 ATGTCCTCTTTCGGGAGCGGGGCGGGGCCCTTCGATCCGCAAGCTTCCAGCAGAATTTTATTCGGTACTCCGACATCTCAGGCACTGCGATCGCCTCAAC TTTCGCCTGTACGATCACCAAGCTATGATTGGCCCACCAATCTCAGGGTTCCTGCAGCCGTGGGGAGGGTGCGGTTACCATCATTGGGTTATGGAAGTCC TGATTTCGTGAACAGCTGCTATCCTCCTGCTATGCCAGACATATCTGAAGTACAAGTACCTCAGTCTCGTTCGTTGGGCTTTGAGAGCTCTCCCACTCTT GCAAGTCATCCCTCTTTCACAGCTAGGCCACAGATGACTATTGAGTCTCCTCCTACTTGGAGTAATGGACACCAGGCTTTCATGAAAGATGACCGTGAAG ATCCTGTGCCTAATGGTACAAAATCTCTAGTTGTTACTCGTAATTCTGGAACCACAGTGGCTGCTAGGGTTAGTGGTATACAGGACCAGAAATGGACTAG ATTACCGCCTCATTCTACTAATGGAACTATTGCACAAGATTCGAGTCTAAGTTTCCCTCAAAGGCCTTATGATTTTCATGTTCACAATGCGGATCCCTTT GTTTCTCCAAAACCAAACACCCCTCCATTGGCTTTTCAGAAGAATCCCATTGCACATGCTGTCCGTCCTTTTGGTGCAGGTCGAAGTGCTGCTTATTCTC CACCGGCATGGGATGAAAGTTCCAGTATGGAAGGCCATTTTCAAGACTTGGGTAGTCGTCAAAAATTGTCCTCAGGTCAAGTTAATGATGTTAGAAATGG CAATCTCCAGAAGCGAAGTAGGTCGCCTCCTGTGAGTGGAAGTTGGCAGGAAAATCCTCCTGTAGAAAACGGAGCTAAAAGACCTTTCTCTCCACTAGGA ATGGATACTCAGTCAGATGCGTTTCGCGTTACCTCAGACCCCCAAACTTCCCAACGAGTGCTGCCATCTATGAAGAATGAAGCTTTAAAATCTATTCCCG TCAGAAATGCCAGTGACGATGTTTCAAAGAGAACTAGGTCACCAAATGTTGCTTCTGATAAGGTTTTCCTGGGGACCTCATTTTCATCAGCTGATGATGC TGAGCGAGAGATACAGGCCAAGGAAAAGCGTTTAGCTCGCTTTAAAGAAGAATTAACTGAAGATTCTAAAAAGAGCATTGATATTCGGGACCGAGACATT CCCGTTGGTGGGCATGAACAATCTGAACAAAGACAAACTGGTCGTTGGAATCATTCTACAGAAGACAGCACCGGTGAAAACAATATGTCAAATTTTGAAG GTTTGGGAGGTTCAAGAAGTATAGTTGGCGTGTGTCCTGATATGTGCCCTGAGTCTGAAAGGGCAGAACGAGAAAGGAAAGGGGATCTTGACCAGTATGA ACGGTTGGATGGGGATAGAAATCATACAAGCCGATTCCTTGCTGTTAAGAAGTACACTAGGACAGCAGAGAGGGAAGCATATCTTATACGTCCAATGCCT ATCCTGCAAAACACCATTGAGTACCTACTTAGTTTGCTGGATAAGCCATATAATAGCGAGTTCCTGGGAAAATATAACTTTCTGTGGGATAGGATGAGAG CAATACGGATGGACTTGAGGATGCAGCACATTTTCAATTTGGAAGCTATAACTATGTTGGAGCAAATGATCAGACTTCATGTAATTGCCATGCATGAACT GTGTGAATATACAAAAGGAGAAGGATTTTCAGAGGGATTCGATGCACATCTTAATATTGAACAGATGAACAAAACATCGGTCGAACTGTTCCAAATGTAT GACGATCACAGGAAGAAAGGAATTAATGTGCCCTCGGAAAAAGAATTTCGTGGTTACTATGCGCTTCTCAAACTAGACAAGCATCCTGGATACAAGGTGG AACCTTCAGAGCTCTCACTTGATCTTGCAAAGATGACTCCAGAGATAAGGCAAACGGCTGAAGTACTTTTCGCTCGTGATGTAGCAAGGGCTTGTAGAAC CGGCAATTTCATTGCCTTTTTTAGGCTGGCGAGGAAAGCGACTTACCTTCAAGCTTGTTTAATGCATGCTCACTTTGCTAAGCTACGGACCCAGGCACTT GCTTCTTTGTACTCTGGTCTACAAACTAAACAAGGAATCCCTGTTTCTCATGTTGCAGAGTGGCTTGCTATCGAGGGAGAAGATGTCGAGAACTTATTAG TATACTATGGCTTCTCAATAAAGGAATTTGAAGAGCCATATATGGTGAAGGAGGGACCTTTTCTCAACAGTGACAAGGACTTCCCAACAAAGTGCTCCAG ACTTGTTCACCTAAAAAAATCAACTATGATTGTTGGAGATGTTTCCTCATCTTCTCTGGAGACATCGCTGCCTGAGCGAACAAGAAAACTTCAAGTTCCT TCAAACTTCAATGTTTCCCCGTCTTCCCAGGAGACATCACTGCCTCAACGAACTAGAAAACTTCACGTTCCTTCAACCTTCAAGCTTGATACAAAAAGTA CTCCAGCTTCTGTTGATAAGAAGAGACCAATCCACGTGATTAACGAAGAAATGTCCACCCTTCAAGCTGTTCCATCACCAAAATTTGGGAAGCAGAAACA GCGTGTTATTGGTAGATTTGAGGTTGAACAAGTGGACACAGAAAGAAATCACGTGACAAGTGCCTCTATTGCACCATGGACCTTTACTACGGATCATAGT GCCCAAAATAGTCTGCCAGTCGTTGTTGGAGTACCAGAGAAAAGAAGAACGGATTCTCCTTTCCCGATCATTCCCGATCTGCATGCTACTCATAAGATAG AGGCCATGCCTCTGCAACCAGGGTTTAGGATGCCGTTGAAAGAGGACCTTTCTAGTGTGGAGAAAGACAACCAGACGGATAATATAATCTGTCAGTTCGT ACCAACCAATCCATCAAAAGATGAGGAACCTCATGATGTTGATCAAGAACATAAAAATGATGAGTTAATGGAGAATTACATAGATGAAGAAGTTGCTGAA GCGAAACTCAAATTGATCATAAGGTTATGGAAGCGGCGTGCTTCAAGGCATAAGGACTTACGCCAGCGGCGAAAAATGGCCGCAGATGCTGCAATTAGCT CATTATCACTGGGACCGCCAATTCAAATGATCCAAGAACAACCAAGCAACGATCTTGAGTTCGACATTGACCGTATCATGCGGGAGAGATGCAGAATATA CAAGCAGTCCTGGTCGAAGCTAAATTTATCTGAAGTCATTTTAAACGAGGTTGCCACAAGAAACCCAGATGCCAAATGTCTCTGTTGGAAACTAGTCTTG TGTTCTCAGGCAGAGGAAGGGGACCAAAGGGGTTCCAACAGCCATCTTAGCCATGCAGCTGCAGGCCCTTGGTTGTATTCAAAACTAATGCCCGGTAAGC AGAAGGATAAGCATGATGATGAACTGCGAGTTTCGTCTCCAGGCCTTTCAATATGGAGGAAGTGGTTTCCAGGCCAGAAGACAAGTAATGAGCTGAACTG CTGCTTGTCAGTTGTTAGGGATTCCAGTTTTTGTAGTCCGAATGAGGCGGTAGCTGGTGCAAGTGCTGTGCTTTTCGTTGTCTCACAAAACATCCCGATG AGTGCGCAGAAAATAAAACTTCATAATCTCATCATGGCTATACGTCCCGGCTCTTCATTGCCTCTACTAGTCTTTTCTGGCAAATCTGATGGAAAGTTAT CAGACCCTTTCTCTGCCATAGTCGGTGAACTGGGACTGAATACTGTTGACAAGTCAAGGATACAAAGTTTTTCTGTACTATTCCTTGTTGGAGACAAAGA AAGAGAAGATTCCAATGGATTTTTCAGTGATGGAAGGTTGAAGGAAGGATTGAGGTGGTTGGCTAGTGAATCACCCATACAACCTGATCTTGAGTACATA AAAATCTCAGAACTGCTTCTCACACGGTTGAGACCATCTCTAGATGCCCTTGAAAGTACGAGTGACGCTGAAGTTGGTCCAAACACTTGTATATCAGCTT TCAATGAAGCTTTGGACTGGTGTACAGAGGAAATTTGTGCTGCTGCCAGAGCCAATGCGACCAGTTGGCCTTGCCCGGAGTTGGTTTCACTGGGTGATTT TCCTAGTGAGAGTATGGTGATCAAGTCATACCTGCCAAGCATAGGATGGAGCGAAGCATCAGCTACTGATCCACTTGTATCGGCTGCACGGAAATGTAAA CTTCCCAGCTTTCCTAATGATGTATCCTGGTTAGATGAAGGTATAACCATCGGTGACCAGGTTGAGAAACTAACTTCTGATCTTGAAAGTAGCTTGACGA GGTACCTGACTGAATCAAGCGGAATGATGGGATTTCTGCTGGCGGAAAAGGAGGCACATGTTATTTTACAAAAAAGCGCCCGTCTGGAGCTCCGGGATAC AACCTATCATATCATTGTGAATTGGGCCAAAATTTTCAGGCGGATTTTCAATTGGCAGCTTGGTAAGCTATCATCCTCGGTCTATGTTTTAAGGTCTCAT CTTGTGGATTCAACATCATGGCTCCTGGTTAAGTCTGGATCTGGAGGAGATGCTTCGTACCCTTATGTCAATCAACTTTCTTTGGATCAAGTCATTCATG TTGGCTCTATTCCTCTGCTGTTGAAGAGCAATCACCCAAAACCATACGTTTCCTTGCCTGCATCGATTTCTGCGTTGAGCTCCCGAGATGGAGATGTTGT GGCTACTATGAGCCCAATTACCCGGACAAGAAAAAATGAAGAAGCTTCTACTTCACAGATTGGGGGTTTAGGTGTCACAGGAGATGTTGAAAGACGACTA GTGGCCAAAACTCCGATTCCCCAGAAAAGTAGCAAGGTGGGTGATAAATTCAGCAGGTTACTGGAGCAGTGTAACATTGTGCAGAACAGGATAGAAGAAA AGCTTTCCATTTACTTTTGA
AA sequence Show only first row Show all	>Lus10034008 pacid=23154686 polypeptide=Lus10034008 locus=Lus10034008.g ID=Lus10034008.BGIv1.0 annot-version=v1.0 MSSFGSGAGPFDPQASSRILFGTPTSQALRSPQLSPVRSPSYDWPTNLRVPAAVGRVRLPSLGYGSPDFVNSCYPPAMPDISEVQVPQSRSLGFESSPTL ASHPSFTARPQMTIESPPTWSNGHQAFMKDDREDPVPNGTKSLVVTRNSGTTVAARVSGIQDQKWTRLPPHSTNGTIAQDSSLSFPQRPYDFHVHNADPF VSPKPNTPPLAFQKNPIAHAVRPFGAGRSAAYSPPAWDESSSMEGHFQDLGSRQKLSSGQVNDVRNGNLQKRSRSPPVSGSWQENPPVENGAKRPFSPLG MDTQSDAFRVTSDPQTSQRVLPSMKNEALKSIPVRNASDDVSKRTRSPNVASDKVFLGTSFSSADDAEREIQAKEKRLARFKEELTEDSKKSIDIRDRDI PVGGHEQSEQRQTGRWNHSTEDSTGENNMSNFEGLGGSRSIVGVCPDMCPESERAERERKGDLDQYERLDGDRNHTSRFLAVKKYTRTAEREAYLIRPMP ILQNTIEYLLSLLDKPYNSEFLGKYNFLWDRMRAIRMDLRMQHIFNLEAITMLEQMIRLHVIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMY DDHRKKGINVPSEKEFRGYYALLKLDKHPGYKVEPSELSLDLAKMTPEIRQTAEVLFARDVARACRTGNFIAFFRLARKATYLQACLMHAHFAKLRTQAL ASLYSGLQTKQGIPVSHVAEWLAIEGEDVENLLVYYGFSIKEFEEPYMVKEGPFLNSDKDFPTKCSRLVHLKKSTMIVGDVSSSSLETSLPERTRKLQVP SNFNVSPSSQETSLPQRTRKLHVPSTFKLDTKSTPASVDKKRPIHVINEEMSTLQAVPSPKFGKQKQRVIGRFEVEQVDTERNHVTSASIAPWTFTTDHS AQNSLPVVVGVPEKRRTDSPFPIIPDLHATHKIEAMPLQPGFRMPLKEDLSSVEKDNQTDNIICQFVPTNPSKDEEPHDVDQEHKNDELMENYIDEEVAE AKLKLIIRLWKRRASRHKDLRQRRKMAADAAISSLSLGPPIQMIQEQPSNDLEFDIDRIMRERCRIYKQSWSKLNLSEVILNEVATRNPDAKCLCWKLVL CSQAEEGDQRGSNSHLSHAAAGPWLYSKLMPGKQKDKHDDELRVSSPGLSIWRKWFPGQKTSNELNCCLSVVRDSSFCSPNEAVAGASAVLFVVSQNIPM SAQKIKLHNLIMAIRPGSSLPLLVFSGKSDGKLSDPFSAIVGELGLNTVDKSRIQSFSVLFLVGDKEREDSNGFFSDGRLKEGLRWLASESPIQPDLEYI KISELLLTRLRPSLDALESTSDAEVGPNTCISAFNEALDWCTEEICAAARANATSWPCPELVSLGDFPSESMVIKSYLPSIGWSEASATDPLVSAARKCK LPSFPNDVSWLDEGITIGDQVEKLTSDLESSLTRYLTESSGMMGFLLAEKEAHVILQKSARLELRDTTYHIIVNWAKIFRRIFNWQLGKLSSSVYVLRSH LVDSTSWLLVKSGSGGDASYPYVNQLSLDQVIHVGSIPLLLKSNHPKPYVSLPASISALSSRDGDVVATMSPITRTRKNEEASTSQIGGLGVTGDVERRL VAKTPIPQKSSKVGDKFSRLLEQCNIVQNRIEEKLSIYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10034008 [exp]	0	1
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	3.3	0.9157
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	4.2	0.9123
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	4.9	0.9011
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	11.2	0.8900
AT5G16680			RING/FYVE/PHD zinc finger supe...		Lus10009530 [exp]	12.0	0.8871
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	14.5	0.8828
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	15.4	0.8880
AT4G30100			P-loop containing nucleoside t...		Lus10033462 [exp]	16.3	0.8921
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	20.8	0.8723
AT1G72390			unknown protein		Lus10013169 [exp]	22.2	0.8610

Compare expression of checked genes

Lus10034008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.