Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06270 505 / 1e-179 Protein phosphatase 2C family protein (.1) AT2G20050 404 / 9e-131 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT5G27930 124 / 2e-31 Protein phosphatase 2C family protein (.1.2) AT3G05640 113 / 7e-28 Protein phosphatase 2C family protein (.1.2) AT5G26010 110 / 9e-27 Protein phosphatase 2C family protein (.1) AT5G10740 110 / 1e-26 Protein phosphatase 2C family protein (.1) AT5G01700 107 / 1e-25 Protein phosphatase 2C family protein (.1.2) AT4G32950 105 / 3e-25 Protein phosphatase 2C family protein (.1) AT4G31750 102 / 4e-24 WIN2 HOPW1-1-interacting 2 (.1) AT4G03415 103 / 6e-24 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012768 [exp] 868 / 0 AT3G06270 502 / 2e-178 Protein phosphatase 2C family protein (.1) Lus10041242 [exp] 631 / 0 AT3G06270 508 / 1e-180 Protein phosphatase 2C family protein (.1) Lus10021952 [exp] 589 / 0 AT3G06270 447 / 2e-157 Protein phosphatase 2C family protein (.1) Lus10034955 [exp] 384 / 5e-123 AT2G20050 1472 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10012976 [exp] 295 / 6e-91 AT2G20050 1269 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10029874 [exp] 124 / 1e-31 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 120 / 3e-30 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10022683 [exp] 115 / 5e-28 AT3G02750 352 / 9e-119 Protein phosphatase 2C family protein (.1.2.3) Lus10015206 [exp] 111 / 6e-27 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028300 [exp] 566 / 0 AT3G06270 498 / 4e-177 Protein phosphatase 2C family protein (.1) Potri.008G198700 [exp] 554 / 0 AT3G06270 481 / 1e-170 Protein phosphatase 2C family protein (.1) Potri.018G084900 [exp] 395 / 2e-127 AT2G20050 1461 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Potri.013G012200 [exp] 119 / 8e-30 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 114 / 5e-28 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 111 / 2e-26 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 108 / 6e-26 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.016G127900 [exp] 108 / 2e-25 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G232700 [exp] 106 / 2e-25 AT5G26010 318 / 7e-108 Protein phosphatase 2C family protein (.1) Potri.010G006100 [exp] 103 / 3e-24 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10034009 pacid=23154890 polypeptide=Lus10034009 locus=Lus10034009.g ID=Lus10034009.BGIv1.0 annot-version=v1.0 ATGGGCTGTGTGCACGGAAAGTGCTGCAGCCATTACGCGCCGTCGTCGTCAGACGGAGGAGATTTGAAGGATTACCGACATATTGGCGCTGGGAGAAAAA GCAACAAGCACTTGCTTACACAGAAGCCTCTGGAAACCGTCTCTGTTCCTTGTCGGAGCTTCAATTTACTCTACTCAGTTCTGACTCAGAGGGGTTACTA TCCTGACCAGCCAGACAAGGAGAACGAGGATTGTTACGCGATCACTACACACCTCCAAGGTAATCCGGACATTCATTTCTTCGGTGTGTTTGATGGCCAC GGCCAGTTTGGTGCCAAATGTTCTAATTTCGTCAAGAATAGGCTGGTTGAGATACTAGCAAACGATCCTACTCTGTTAGATGACCCCATTAATGCTTACA ATTCTGCATTTGCAACCACGAATTCCGAGCTGCATAGCAGCAGTGAGATTGATGATTCGATGAGCGGGACGACTGCGATCGCTGTCCTTGTTGTCGGGGA TAAGATCTACGTCGCGAATGTGGGCGATTCGAGGGCTGTGATGGCTGTTAAGAAGAAGAGGAATACTCATAGGGTTGTGGCTGAGGATTTGTCTTGTGAT CAAACACCGTTTAGGAAAGATGAGTGTGAAAGGGTGAAGCTTTGTGGGGCTAGAGTGTTGAGTGTTGATCAAGTGGAAGGGCTTAAGGATCCGGATGTGC AGTCGTGGGGAGACGAGGAAAGCGATGGAGATGATCCTCCTAGGTTGTGGGTGCAGGATGGCATGTACCCTGGTACGGCATTTACGAGAAGTGTAGGTGA CAGTACTGCCGAGAGGATTGGTGTTATCGCTGAGCCGGAAATGACTGTGGTTCAGCTTACTCCTAACCATTCCTTCTTTGTCGTAGCCAGCGATGGAGTT TTCGAGTTCCTCTCCAGCCAAGTCGTCGTTGATATGGCTGCAAGATATGGAGACCCTCGAGATGCATGTTCTGCAATTACTGGAGAGTCTTACAAACTTT GGCTGGAGCATGAAAATCGCACGGATGATATTACGATCTTAATCGTCCAGATTAAAGACTTGATTAGCCCAGGTGGGAGTGCAACGAATGGAACCACTGT GACCGATAAAAGTGTAGCCAGTGCAAAGCAACGCAATGGATCTGCCGATCTTAATATCAATACAAACTTGGACTTCGCGGATATGCAATGTCCAGACAGT CGAAGCCAAGTTGTTGTTCCACATCCACATCGGAAGCCCTTTGAGATGGTTGGTGCTTCATTGTTTTTTTCAAGCTGGGTTTACAATAGTTTCCTTTCTG TTCTTATGGCTTACTGCAACACACCCTTGAGATAG
AA sequence Show only first row Show all	>Lus10034009 pacid=23154890 polypeptide=Lus10034009 locus=Lus10034009.g ID=Lus10034009.BGIv1.0 annot-version=v1.0 MGCVHGKCCSHYAPSSSDGGDLKDYRHIGAGRKSNKHLLTQKPLETVSVPCRSFNLLYSVLTQRGYYPDQPDKENEDCYAITTHLQGNPDIHFFGVFDGH GQFGAKCSNFVKNRLVEILANDPTLLDDPINAYNSAFATTNSELHSSSEIDDSMSGTTAIAVLVVGDKIYVANVGDSRAVMAVKKKRNTHRVVAEDLSCD QTPFRKDECERVKLCGARVLSVDQVEGLKDPDVQSWGDEESDGDDPPRLWVQDGMYPGTAFTRSVGDSTAERIGVIAEPEMTVVQLTPNHSFFVVASDGV FEFLSSQVVVDMAARYGDPRDACSAITGESYKLWLEHENRTDDITILIVQIKDLISPGGSATNGTTVTDKSVASAKQRNGSADLNINTNLDFADMQCPDS RSQVVVPHPHRKPFEMVGASLFFSSWVYNSFLSVLMAYCNTPLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06270			Protein phosphatase 2C family ...		Lus10034009 [exp]	0	1
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	4.6	0.7451
AT3G51650			unknown protein		Lus10009100 [exp]	11.6	0.7318
AT1G31710			Copper amine oxidase family pr...		Lus10010542 [exp]	14.8	0.7382
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10022758 [exp]	18.7	0.7025
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	19.6	0.7090
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	21.9	0.6900
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	23.9	0.6963
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	24.2	0.7059
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	26.5	0.7141
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	29.7	0.7068

Compare expression of checked genes

Lus10034009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.