Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44250 115 / 2e-31 CYP71B38 "cytochrome P450, family 71, subfamily B, polypeptide 38", cytochrome P450, family 71, subfamily B, polypeptide 38 (.1) AT5G25120 113 / 1e-30 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25130 113 / 1e-30 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT5G25140 112 / 3e-30 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25180 111 / 6e-30 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT1G13080 108 / 1e-29 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26290 108 / 5e-29 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G26200 108 / 9e-29 CYP71B22 "cytochrome P450, family 71, subfamily B, polypeptide 22", cytochrome P450, family 71, subfamily B, polypeptide 22 (.1) AT2G02580 107 / 1e-28 CYP71B9 "cytochrome P450, family 71, subfamily B, polypeptide 9", cytochrome P450, family 71, subfamily B, polypeptide 9 (.1) AT3G26300 107 / 2e-28 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012767 [exp] 209 / 9e-67 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030708 [exp] 168 / 4e-51 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 159 / 2e-47 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10042815 [exp] 135 / 1e-38 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10029035 [exp] 128 / 6e-36 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10004343 [exp] 120 / 1e-35 AT2G45550 201 / 2e-62 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10034230 [exp] 127 / 2e-35 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10018263 [exp] 126 / 2e-35 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10002885 [exp] 125 / 7e-35 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365366 [exp] 120 / 2e-34 AT3G26230 228 / 3e-71 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.001G364900 [exp] 119 / 9e-34 AT3G26300 228 / 1e-70 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 120 / 5e-33 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 120 / 5e-33 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 119 / 6e-33 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365300 [exp] 117 / 3e-32 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G131001 [exp] 114 / 3e-32 AT3G26230 230 / 4e-72 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.011G130850 [exp] 115 / 3e-31 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 115 / 3e-31 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G184900 [exp] 114 / 5e-31 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10034010 pacid=23154762 polypeptide=Lus10034010 locus=Lus10034010.g ID=Lus10034010.BGIv1.0 annot-version=v1.0 ATGGTCAATGTATGGGCTATTGGAAGATACTCTCGTTACTGGGACGAGCCGGATACCTTCTCTCCAGAGAGGTTTCTCGACTCGTTGCTAGACTATAAAG GTACTCACTTCGTGTATATACTGTTTGGTGCTGGAAGAAGGATTTGCCCAGGTATGTCCTCTCGAATGGCTTTGGTTCAGGCAACACTAGCGAATCTGTT GTTTCACTTTGACTGGATGCCACCGGCCGGAATGTCCAAGCTCGAAGACTTGGACATGATTGAACACTTTGGCATCGCGCTAGCGAGGAAGGAAATACTA CGCCTCGTCCCTTTAGCTCCGCCTCCTCGGAATGGTTAA
AA sequence Show only first row Show all	>Lus10034010 pacid=23154762 polypeptide=Lus10034010 locus=Lus10034010.g ID=Lus10034010.BGIv1.0 annot-version=v1.0 MVNVWAIGRYSRYWDEPDTFSPERFLDSLLDYKGTHFVYILFGAGRRICPGMSSRMALVQATLANLLFHFDWMPPAGMSKLEDLDMIEHFGIALARKEIL RLVPLAPPPRNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10034010 [exp]	0	1
					Lus10006297 [exp]	4.7	0.6939
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	7.6	0.7027
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10006178 [exp]	12.2	0.6734
					Lus10026868 [exp]	13.0	0.6788
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10000652 [exp]	14.2	0.6938
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Lus10018290 [exp]	15.0	0.6626
AT5G12060			Plant self-incompatibility pro...		Lus10000799 [exp]	18.2	0.6584
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	20.9	0.6742
					Lus10033149 [exp]	24.6	0.6550
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	25.7	0.6550

Compare expression of checked genes

Lus10034010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.