Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06260 521 / 0 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT4G02130 426 / 8e-150 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G13250 424 / 2e-149 GATL3 galacturonosyltransferase-like 3 (.1) AT1G02720 417 / 4e-146 GATL5 galacturonosyltransferase 5 (.1.2) AT3G62660 408 / 1e-142 GATL7 galacturonosyltransferase-like 7 (.1) AT3G28340 402 / 2e-140 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT1G70090 402 / 7e-140 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 395 / 3e-137 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G50760 389 / 1e-135 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 382 / 2e-132 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012765 [exp] 653 / 0 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10041489 [exp] 427 / 4e-150 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 422 / 2e-148 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10002440 [exp] 412 / 4e-143 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10018801 [exp] 399 / 5e-139 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 397 / 2e-138 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 396 / 2e-138 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10010727 [exp] 392 / 4e-136 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 387 / 2e-134 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018100 [exp] 524 / 0 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.010G242300 [exp] 495 / 4e-177 AT3G06260 524 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.010G129400 [exp] 452 / 3e-160 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G116900 [exp] 439 / 3e-155 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.002G200200 [exp] 418 / 1e-146 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.007G031700 [exp] 407 / 2e-142 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.014G125000 [exp] 407 / 5e-142 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G040300 [exp] 400 / 1e-139 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G128000 [exp] 398 / 5e-139 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.002G132900 [exp] 396 / 4e-138 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10034012 pacid=23154648 polypeptide=Lus10034012 locus=Lus10034012.g ID=Lus10034012.BGIv1.0 annot-version=v1.0 ATGGCCTTGATTTGGAGCTTTTCTTCTCTTCTAGGCCTCCTGTCTCTCCTCTTCCTCATTCTCTTCTCCTTCCCCACCACCACCGCCGCTGCCGCCAACA GACCCTCTTCCTCCCTTAACCTCCCATCCTTTCGAGAGGCCCCCTCGTTCCGGAATGGGGATCAATGTGGACCAACAAAGATTCACGTGGCCATGACCCT CGACATCAACTACCTCCGGGGCACAATGGCAGCCGTCCTGTCGATGCTCCAACACTCGACCTGCCCTGAGAATCTATCTTTTCATTTCCTCTCTGCACAT TTCGAGCTCGAGCTCTCGTCCAGCATCAACCAGACCTTCCCTTACCTGCCCTTTCGGATATACCACTTCAATCCAAACAGGGTCAGGGGTAAAATCTCTC GGTCCATCCGACAAGCCCTGGACCAGCCATTAAACTACGCCCGAATCTACCTGGCCGACATCCTCCCCCAGGACGTCGATAGGGTCATCTACTTCGACTC GGACATCATCATGGTCGACGACATTGGCAAGTTGTGGAAGGTCGACATGGAAGAAAGAGTTGTGGCAGCGCCAGAGTACTGCCATGCAAACTTCACCCCG TATTTCACAGACCGGTTCTGGTCAGACGGAAAGCTGGCGGGCACGTTCGAGGGGCGGAGGCCGTGCTACTTTAACACGGGCGTGATGGTGATGGACGTGG AGAAGTGGAGGGAAGGAAGGTACACGACGAGGGTGGAGGAATGGATGGCAGTGCAGAAGAGGGAGAGGATATATCACCTAGGTTCATTGCCGCCCTTCTT GCTGGTGTTGGCTGGGAACATAAAACCGGTGGATCACCGGTGGAACCAACACGGACTGGGAGGGGATAACTTCGAAGGGAGGTGTAGGAATTTGCATCCT GGTCCGATAAGTCTATTGCATTGGAGCGGGAAAGGGAAGCCATGGCTAAGGCTTGATTCCAGGAAGCCGTGTATTGTGGATTATCTGTGGGCTCCTTACG ATCTTTACCGTTCCTCCAAGCATGCTTTGGAAGAGTGA
AA sequence Show only first row Show all	>Lus10034012 pacid=23154648 polypeptide=Lus10034012 locus=Lus10034012.g ID=Lus10034012.BGIv1.0 annot-version=v1.0 MALIWSFSSLLGLLSLLFLILFSFPTTTAAAANRPSSSLNLPSFREAPSFRNGDQCGPTKIHVAMTLDINYLRGTMAAVLSMLQHSTCPENLSFHFLSAH FELELSSSINQTFPYLPFRIYHFNPNRVRGKISRSIRQALDQPLNYARIYLADILPQDVDRVIYFDSDIIMVDDIGKLWKVDMEERVVAAPEYCHANFTP YFTDRFWSDGKLAGTFEGRRPCYFNTGVMVMDVEKWREGRYTTRVEEWMAVQKRERIYHLGSLPPFLLVLAGNIKPVDHRWNQHGLGGDNFEGRCRNLHP GPISLLHWSGKGKPWLRLDSRKPCIVDYLWAPYDLYRSSKHALEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	0	1
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	2.8	0.9816
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	4.2	0.9788
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	6.6	0.9765
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	6.9	0.9732
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	7.1	0.9767
AT3G51710			D-mannose binding lectin prote...		Lus10025258 [exp]	7.7	0.9474
AT3G57450			unknown protein		Lus10029496 [exp]	8.2	0.9583
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10004364 [exp]	8.5	0.9417
AT2G44260			Plant protein of unknown funct...		Lus10017580 [exp]	8.5	0.9696
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	10.2	0.9611

Compare expression of checked genes

Lus10034012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.