Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20790 778 / 0 clathrin adaptor complexes medium subunit family protein (.1.2.3) AT4G15475 356 / 5e-110 F-box/RNI-like superfamily protein (.1) AT2G25490 125 / 2e-29 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 120 / 8e-28 EBF2 EIN3-binding F box protein 2 (.1) AT5G27920 119 / 3e-27 F-box family protein (.1) AT5G23340 115 / 5e-27 RNI-like superfamily protein (.1) AT5G01720 101 / 1e-21 RNI-like superfamily protein (.1) AT1G47056 90 / 2e-18 VFB1 VIER F-box proteine 1 (.1) AT1G21410 88 / 4e-18 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 87 / 5e-18 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012764 [exp] 1625 / 0 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034015 [exp] 172 / 2e-48 AT1G03350 54 / 2e-08 BSD domain-containing protein (.1) Lus10002014 [exp] 134 / 5e-32 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 132 / 1e-31 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 127 / 7e-30 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10001264 [exp] 123 / 2e-28 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 121 / 1e-27 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 108 / 1e-24 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 106 / 5e-24 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028600 [exp] 937 / 0 AT2G20790 790 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.006G254100 [exp] 132 / 1e-31 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 130 / 5e-31 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 130 / 7e-31 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G105400 [exp] 130 / 9e-31 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 124 / 1e-28 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.016G128400 [exp] 122 / 2e-28 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 119 / 2e-27 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 114 / 1e-25 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 106 / 5e-24 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10034013 pacid=23154873 polypeptide=Lus10034013 locus=Lus10034013.g ID=Lus10034013.BGIv1.0 annot-version=v1.0 ATGCCTGGCAGATTCTCCAGCATCATCTTCATCTTCGATATCCCAACTCAGATCCTCATCTTCCTCGGCACAACTCAACCGCTTCCTCAAATCAACTCGA GTTGTGCCTCCATCACCCTTTCCTCCAATGGTGTTGTTGCTGCTATCATCACCATTGCTACCAATGTCTTCAATTTCATCCCATCCCAACTCCTCCACCT CCTGCTGCTGCTTCAACGCCAGTTTCGAAGCATCATTTTCCTCGCAGGATTCGCCACCTCTACCATTGGTGCCTTCCTTCTCCTCCCAAGATCCACCCTC CTCCTTCAGACCCTCATCATTGGTTTCTTGGGTTGCTATGTTGGTGATGGCGGTCTTGCTGCTGTTGGAAAGTGCTGTAAACAACTAGAGGAACTAAATT TGCGGTTTTGCGAAGATTTAACTGACGTGTGCTTGACTGAGCTAGCTGAAGGCTGTGGGATATCGTTAAAGACTCTTGGAGTTGCAGCTTGTGCAAAAAT AACGGACAAATCGTTAGAAGCAGTGGGTTCCCACTGCAAATCCTTAGAAACGTTGTCACTGGATTCTGAATTTATTCAGAATGATGGGGTCCTTGCCATT GCTAAAGGGTACCCTCACCTGAAAGTCCTGAAGCTGCAATGTATCAATGTTACCGATGAGGCCCTTATAGAGGTAGGAAAGTATTCTTCGACACTAGATG TGTTGGCTTTGTACAGCTTCCAGCGGTTTACTGACAGGGGCTTGTTTGCTATTGGAGATGGATGTAAGAAGTTGAAAAATCTTACTCTTAGAGACTGCTA TTTCCTCAGTGACCAGGGCTTAGGATCAATTGCCACGGGTTGTAAAGAACTCACACATCTTGAGGTTGGGAACAAAGGTATTATAGCCGTCGGAGAGAAC TGCAAATCACTGGAAGATCTTAGCCTTAGATTTTGTGATAGGGTGGGAGACGATGCCCTTGTCTCCATTGGCCAATGCCACTCCCTGCAAACCCTAAATG TTAGTGGGTGCCATCAAATCGGCGACACTGGAATCACAGCGATTGCGAGAGGCTGCCCTGAACTTAGTTACCTTGACGTGAGCGTGCTCCAGAATCTAGG AGACATGGCACTTGCAGAGCTAGGAGAGGGTTGTCCAGCTCTAAAAGAGATAGTCATTTCACACTGCCGTCAAATAACAGACGTAGGGCTCTCCCATCTC GCAAGAAACTGCGAGATGCTTGAATCTTGCCACGTAGTTTACTGCCCTGGGGTAACAGCAGCTGGGGTGGCCACCGTGGTGTCCGGTTGCCAGAACATAA ACAAGGTGCTCGTCGAAAAGTGGAAGGTCAGCGAGAGAACCAAACGCAGGGCTGGCTCAGTCATCTCCTACCTATGCATCGATCTTGAGCGTGTTACGGA AGCAGCGCCGCCGGAGCAGAAACAGCGGAGCGGAAGTCACAAGGCGATGCCTGGTGGTTGTAGCATCAGAGCTCTGTGGATCCTCAACAGCTTCGACACT GTCGTTTTCTCCAGGAGGTTTCCGGTGGTGGAGAAACGGTGGAAGGCCGCTTGCAAGATCGAAGACATCAGCTCCTCCGTAGAAGATCCTGTTGAGTGCG CTCTAGTTCGGATTCTTCCCAATGATTCCGAGCTCGCTGCCGCATTTGCCGAAAGGAAGCGAAGGGAGGGATCCACGCGAGGTTTTGGGATAAGAGTGGC ACAGTCAACTCAAGGATCAGACTCTTGGGTTGATGACCCGATCACTCGTCATGTCATAAGTCTGCGCATCGGTGCGGAGGAGGAAGAAGATAAAAAACTG CTGTGGCCATTAATTCTTCATTTGAAAGGTCCCTATACCATGCTTGTTTTGCCACTGGTTGAGCCTAAGCATTTGAAGGCTTATGGGAAAATGTCCACAA ACCCCGGTTGTGGGGATGCTGTTGGTGAAGAAGCAAGTTTGTCTACCCTCCTGCTTGATCTTCCTTCCATCACAGGAGCCTTTATGGTGGCACATGCTGT TGGTGACATTGTTACCGGTGATATGGTGGAACCTGAGGTGGTCGTTAGTGCAGCTCCTTCTGTGGGAGGATTGTTGGATTCATTGACGGGGAGCATAGGA ATCACAGGTATTGCAGCCAGGGCAAAACCTGTTGCTGCACCAGTTGCAGCTGCTACCCCCTTAGGCACTGCTGCTATCGGATCTGTGGCTTTAGATGCTC CAGGATCTAGATCTTTGGATAAAGATGCACTTCGAAATTTCATTAGCAATGCAATGCCTTTCGGTACTCCCTTGGACCTTAACTATCTGAATATTTTTGC TATCAAAGCCAATGGCTTTACTTCATCAGATTTGCCTCCAGCAGACCTCAAGCAGCCAGCATGGAAGCCATATCTCTACAAAGGAAAGCAGAGAATACTT TTCACTATTCATGAGACAATACATGCAGCTATGTATGACAGGGATGACATTTCAGATACTATGTCGGTAGCAGGGCAAATCAATTGTCGAGCAGAATTGG ATGGGTTGCCTGATGTGTCTGTCCCTTTAACAGGTTTAAACAAGAGTCATGTTGAGGTTTTATCTTTTCATCCGTGTGCTCAAGTTCCAGAACATGGCAT GGATAAGCAGAGTGTGATGTTTTCACCTCCAATGGGCAATTTTGTTCTAGTCCGTTATCAGGCAAGCTGTAGGCTGGACCCTCCTGTAAAAGGATTTTAC CAGCTATCAATGGTCTCAGAAGATGAAGGTGCATTTTTGTTCAAGCTGGGCTTAATGGGAGGTTACAAGAGTCCGTTCACAATTGAGTTCTGTACTGTGA TGATGCCATTTCCAAGGAGGAAGGTTGTATCTGTTGAGGGGACCCCCTCTATTGGGGTTGTTTCAAACACTGAGCACTCCATTGAATGGAAAATCATTGC AAGTGGTCGGAGTCTCTCTGGGAAAAGCATTGAAGCAAGTTTCCCTGGGACGGTTAAATTTGCACCCTTTCAACCTCAGAGAGCACCGTCATCTAGGTCT GGGTCTCAGAATATGGCTGATGAGGACAGTGATGTTGAGGCAGATAATACAAACAATATGGTGAATGTGGATGAATTCCTGATGGAGAAAATTAATAAGG ATCTTCCTCCAGCTGACCTGGAAGAACCTTTTTGCTGGCAAGCATACAACTATGCTAAGGTATCTTTCAAGGTTAGCGGGTCCTCATTATCTGGAATTTC CGTTGATCCAAAATCTGTGAGTATCTACCCAGCTGGCAAAGCTCCAGTGGAGTTGTCGACTCAGGTTACATGTGGGGATTACATACTATGGAATACGTTA GGGAAGTGTCCATCAGCTCCGTAG
AA sequence Show only first row Show all	>Lus10034013 pacid=23154873 polypeptide=Lus10034013 locus=Lus10034013.g ID=Lus10034013.BGIv1.0 annot-version=v1.0 MPGRFSSIIFIFDIPTQILIFLGTTQPLPQINSSCASITLSSNGVVAAIITIATNVFNFIPSQLLHLLLLLQRQFRSIIFLAGFATSTIGAFLLLPRSTL LLQTLIIGFLGCYVGDGGLAAVGKCCKQLEELNLRFCEDLTDVCLTELAEGCGISLKTLGVAACAKITDKSLEAVGSHCKSLETLSLDSEFIQNDGVLAI AKGYPHLKVLKLQCINVTDEALIEVGKYSSTLDVLALYSFQRFTDRGLFAIGDGCKKLKNLTLRDCYFLSDQGLGSIATGCKELTHLEVGNKGIIAVGEN CKSLEDLSLRFCDRVGDDALVSIGQCHSLQTLNVSGCHQIGDTGITAIARGCPELSYLDVSVLQNLGDMALAELGEGCPALKEIVISHCRQITDVGLSHL ARNCEMLESCHVVYCPGVTAAGVATVVSGCQNINKVLVEKWKVSERTKRRAGSVISYLCIDLERVTEAAPPEQKQRSGSHKAMPGGCSIRALWILNSFDT VVFSRRFPVVEKRWKAACKIEDISSSVEDPVECALVRILPNDSELAAAFAERKRREGSTRGFGIRVAQSTQGSDSWVDDPITRHVISLRIGAEEEEDKKL LWPLILHLKGPYTMLVLPLVEPKHLKAYGKMSTNPGCGDAVGEEASLSTLLLDLPSITGAFMVAHAVGDIVTGDMVEPEVVVSAAPSVGGLLDSLTGSIG ITGIAARAKPVAAPVAAATPLGTAAIGSVALDAPGSRSLDKDALRNFISNAMPFGTPLDLNYLNIFAIKANGFTSSDLPPADLKQPAWKPYLYKGKQRIL FTIHETIHAAMYDRDDISDTMSVAGQINCRAELDGLPDVSVPLTGLNKSHVEVLSFHPCAQVPEHGMDKQSVMFSPPMGNFVLVRYQASCRLDPPVKGFY QLSMVSEDEGAFLFKLGLMGGYKSPFTIEFCTVMMPFPRRKVVSVEGTPSIGVVSNTEHSIEWKIIASGRSLSGKSIEASFPGTVKFAPFQPQRAPSSRS GSQNMADEDSDVEADNTNNMVNVDEFLMEKINKDLPPADLEEPFCWQAYNYAKVSFKVSGSSLSGISVDPKSVSIYPAGKAPVELSTQVTCGDYILWNTL GKCPSAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20790			clathrin adaptor complexes med...		Lus10034013 [exp]	0	1
AT3G14750			unknown protein		Lus10038143 [exp]	1.0	0.9118
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	2.0	0.8992
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	2.6	0.8876
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	2.8	0.8954
AT3G45830			unknown protein		Lus10018121 [exp]	4.6	0.8973
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	5.5	0.8945
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	7.7	0.8923
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	9.5	0.8708
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	11.6	0.8681
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	12.0	0.8721

Compare expression of checked genes

Lus10034013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.