Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03350 55 / 9e-09 BSD domain-containing protein (.1) AT4G13110 43 / 9e-05 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034013 [exp] 182 / 1e-52 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10012761 [exp] 120 / 9e-32 AT1G03350 241 / 1e-76 BSD domain-containing protein (.1) Lus10042670 [exp] 60 / 3e-10 AT1G03350 305 / 7e-99 BSD domain-containing protein (.1) Lus10029636 [exp] 54 / 3e-08 AT1G03350 302 / 1e-97 BSD domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028801 [exp] 79 / 6e-17 AT1G03350 211 / 1e-62 BSD domain-containing protein (.1) Potri.008G199100 [exp] 76 / 6e-16 AT4G13110 215 / 8e-66 BSD domain-containing protein (.1) Potri.008G199000 [exp] 67 / 6e-13 AT4G13110 179 / 4e-53 BSD domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034015 pacid=23154723 polypeptide=Lus10034015 locus=Lus10034015.g ID=Lus10034015.BGIv1.0 annot-version=v1.0 ATGGTGAGCCCGATTAAGATCATCTCCACATTCCCTTTTCTTCTTGTTATCCTTTTCCTAACCGCCCTTCATAATCGTCCAATCATTTCTCTTTTTCCGT CTTCTTCCCCGACGTCGCTCTCCCAGCCACCAAGCTCAGCCTCCGATTCCAACTCCAGTCCGCCGCCTCTCACCTCATCCATCAATCTCGATCCATGGTC CTTTGGCATCATGATAAAAAAGCTGGCCACTAAATCAGAGTCCGTCATCGAAACTTACCGCCGCCACCTGGAGGAGCTGGGATCCGGCTCAATCAAGAAT GAGTCGAATGACAGAAGAGAAAGTGCTGAAGTTGGGCATGAAAATGTTCACCAAGAAACCAATGATGAGGGTCTGAAGGAGGAGGGTGGATCTTGGGAGG AGAAGGAAGGCACCAATGGTAGAGGTGGCGAATCCTGCGAGGAAAATGATGCTTCGAAACTGGCGTTGAAGCAGCAGCAGGAGGTGGAGGAGTTGGGATG GGATGAAATTGAAGACATTGGTAGCAATGGTGATGATAGCAGCAACAACACCATTGGAGGAAAGGGTGATGGAGGCACAACTCGAGTTGATTTGAGGAAG CGGTTGAGTTGTGCCGAGGAAGATGAGGATCTGAGTTGGGATATCGAAGATGAAGATGATGCTGGAGAATCTGCCAGGCATTGA
AA sequence Show only first row Show all	>Lus10034015 pacid=23154723 polypeptide=Lus10034015 locus=Lus10034015.g ID=Lus10034015.BGIv1.0 annot-version=v1.0 MVSPIKIISTFPFLLVILFLTALHNRPIISLFPSSSPTSLSQPPSSASDSNSSPPPLTSSINLDPWSFGIMIKKLATKSESVIETYRRHLEELGSGSIKN ESNDRRESAEVGHENVHQETNDEGLKEEGGSWEEKEGTNGRGGESCEENDASKLALKQQQEVEELGWDEIEDIGSNGDDSSNNTIGGKGDGGTTRVDLRK RLSCAEEDEDLSWDIEDEDDAGESARH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03350			BSD domain-containing protein ...		Lus10034015 [exp]	0	1
AT4G20190			unknown protein		Lus10036246 [exp]	1.0	0.7222
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10019683 [exp]	5.7	0.6610
AT5G41720			unknown protein		Lus10011415 [exp]	13.4	0.6004
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009661 [exp]	15.2	0.5821
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	22.8	0.6466
AT5G59830			unknown protein		Lus10005889 [exp]	30.4	0.6237
					Lus10003927 [exp]	36.2	0.6100
AT4G12010			Disease resistance protein (TI...		Lus10009107 [exp]	44.5	0.5765
AT1G09050			unknown protein		Lus10004495 [exp]	47.2	0.6444
AT5G09450			Tetratricopeptide repeat (TPR)...		Lus10034221 [exp]	48.1	0.6102

Compare expression of checked genes

Lus10034015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.