Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23540 610 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G14290 607 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G17150 386 / 4e-130 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001114 [exp] 914 / 0 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021948 [exp] 759 / 0 AT4G14290 674 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 759 / 0 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039125 [exp] 345 / 7e-112 AT4G17150 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10038733 [exp] 280 / 6e-88 AT4G17150 469 / 1e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10011949 [exp] 43 / 0.0006 AT5G20520 437 / 1e-155 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029200 [exp] 667 / 0 AT4G14290 680 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G200400 [exp] 610 / 0 AT4G14290 672 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G001000 [exp] 405 / 5e-136 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G000700 [exp] 405 / 7e-136 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10034017 pacid=23154785 polypeptide=Lus10034017 locus=Lus10034017.g ID=Lus10034017.BGIv1.0 annot-version=v1.0 ATGCTTGTTTATGGTAGAGCTGAATACAATCCAAAGCATGATTTGTTGGACCAAGAGTTCATGTTACGAGGGAAATTGTACCAGAGAAAGGATTTGGAGA TAAAAAATGACAGGGGAGATGTTCTTCAATGCAGTCATTATTTGCCCGTCAGTCTTGTAGAAAAGCCTCTGCCCTGTGTAATCTATTGCCATGGAAACAG TGGATGCAGGGCTGATGCAAGTGAAGCTGCTATCATACTGCTGGCTTCAAATATCACAGTGTTCACTCTTGATTTTTCTGGATCTGGACTATCTGGAGGG GATCATGTCACCCTGGGATGGTATGAAAAAGATGACCTAAGGTCAGTGGTTGATTATTTGAGGCAGGATGGAAATGTCTCTTTGATCGGGCTGTGGGGCC GTTCAATGGGCGCTGTCACAAGCCTAATGTATGGCGCACAGGATCCATCAATTGCTGGAATGGTGCTGGACAGTCCCTTTTCCGATTTGGTTGATTTGAT GATGGAACTTGTGGATACCTACAAGTTCCGTTTGCCTAAGTTTACAGTAAAATTTGCAATCCAGTACATGCGAAAAGCCATCCAGAAGAAGGCAAAGTTT GATATAACGGAGCTGAACACTATTAAGGTAGCTCAGTCTTGCTTCGTTCCGGCTTTATTTGGGCATGGAATTGAAGATGATTTCATACAGCCTCATCATT CCGATCAGATATATGAAGCTTACATGGGAGATAAGAACATAATCAAATTTGAAGGAGATCACAACTCTCCCCGACCACAATTTTATTTTGATTCCATAAA CATCTTTTTCCACAATGTATTACAACCTCCAGAGGATGAGATTGGAGGACCTTTATTGGACACAATGTTTGATTACTTTGGTAAGGATCGGTTGAACACT GCTTATAACTTGAGTCATAGGCCGGAATCATCAGTTGCACCCAACGGTATTGACTTCTACACCGTGATTCCAAACTTTCTATGGGAGCTCTTTCTTACTA GCTTTGTTCGGTTGGTGGCATCTGACTGGCTCCTTTATGTGTGTTTAGCAGTAGGTCCATCAGTAAACAGCACTGAAGATGCTATTGAGCAAGTCCGTGC CAGAAGGCCCATGAGTCGGATTGAGGTGCCCTCGGATATTCCATCAGACGAAGAAAAATCCGAAAATCAGGATGGGGAAACTGATGATGAGCACAAGCCA TCATCGTCTCAAATGATCAGCTTTGAGTTGGCCAATGGCAATCCGGATGGGCCTCATGTTCCGGCGACAACAGATGATGATCAGTTTGTCGAATATGAAC TGGATGACTTGACAGGTGTTCCGTCTAATGCGGAAGAGGAAGAAAGGATGCTCATGGAAGCAATTATTGCGTCTTTAAAGAACATGGAAGTACCAGCGGC TAATGCCTCCGGTACAGAATCATCACAAAGTAGTACACCAGCAGCTACTCCATCAAAGACGGAACATTTTGATTCTCCAGAGGAACCCACAGTTTCGAAC AAAGTATCAACTCCAGCTTTAAAGAGCAATGGTGAAGTTTCACCTAGTTCTGGAGTTTCTTCTGCACTCCTTTCAGGGAATTCTTCTTCCATGGAGGAAT CCAGGACGTCTTCCAGTCGTAGCGACACGTCAGCAGGCATTGAGACAGACCTGTCAGGTAAGACAAAGGCAACAGTAACAGTAGAACGGAACCCTTCAAC TTCAACCCACATGATGGATGGTCTAATGCGTCGTTGGGATTTCAACCTGTTCAGAAACAACAGATGA
AA sequence Show only first row Show all	>Lus10034017 pacid=23154785 polypeptide=Lus10034017 locus=Lus10034017.g ID=Lus10034017.BGIv1.0 annot-version=v1.0 MLVYGRAEYNPKHDLLDQEFMLRGKLYQRKDLEIKNDRGDVLQCSHYLPVSLVEKPLPCVIYCHGNSGCRADASEAAIILLASNITVFTLDFSGSGLSGG DHVTLGWYEKDDLRSVVDYLRQDGNVSLIGLWGRSMGAVTSLMYGAQDPSIAGMVLDSPFSDLVDLMMELVDTYKFRLPKFTVKFAIQYMRKAIQKKAKF DITELNTIKVAQSCFVPALFGHGIEDDFIQPHHSDQIYEAYMGDKNIIKFEGDHNSPRPQFYFDSINIFFHNVLQPPEDEIGGPLLDTMFDYFGKDRLNT AYNLSHRPESSVAPNGIDFYTVIPNFLWELFLTSFVRLVASDWLLYVCLAVGPSVNSTEDAIEQVRARRPMSRIEVPSDIPSDEEKSENQDGETDDEHKP SSSQMISFELANGNPDGPHVPATTDDDQFVEYELDDLTGVPSNAEEEERMLMEAIIASLKNMEVPAANASGTESSQSSTPAATPSKTEHFDSPEEPTVSN KVSTPALKSNGEVSPSSGVSSALLSGNSSSMEESRTSSSRSDTSAGIETDLSGKTKATVTVERNPSTSTHMMDGLMRRWDFNLFRNNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10034017 [exp]	0	1
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	2.0	0.9093
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10010126 [exp]	2.4	0.9104
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	12.3	0.9022
AT2G25605			unknown protein		Lus10008087 [exp]	16.7	0.8348
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10037222 [exp]	18.5	0.8466
AT5G17070			unknown protein		Lus10002137 [exp]	18.7	0.8800
AT2G43140	bHLH	bHLH129	basic helix-loop-helix (bHLH) ...		Lus10026733 [exp]	19.3	0.8674
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10022265 [exp]	19.5	0.8253
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	22.2	0.8821
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10012803 [exp]	23.0	0.8599

Compare expression of checked genes

Lus10034017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.