Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18980 1021 / 0 ARM repeat superfamily protein (.1) AT3G06210 970 / 0 ARM repeat superfamily protein (.1) AT4G14280 774 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001111 [exp] 1591 / 0 AT5G18980 1036 / 0.0 ARM repeat superfamily protein (.1) Lus10042594 [exp] 160 / 2e-46 AT5G18980 117 / 3e-32 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029300 [exp] 1147 / 0 AT5G18980 1039 / 0.0 ARM repeat superfamily protein (.1) Potri.008G200500 [exp] 1120 / 0 AT5G18980 1009 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034018 pacid=23154741 polypeptide=Lus10034018 locus=Lus10034018.g ID=Lus10034018.BGIv1.0 annot-version=v1.0 ATGGACGGCAGCAGAGCTGAAGAAGGAAGCAACAGCAACAGCATTCACCTGGAGCTCCGCCGCCTCAGCGAAATTTACGGCTCCACCCCAACTATTTTCG AGCCTCAAATCAGCGGCGGGGGAGTTGAGAAGAGAGACAGCAGCACCGCCAATTCATTCTCCCCTACGACGACGAAAATTACTAGCGGAGGAGGAGCCCC TGAGAAGAAACTGACTCTGTTCGCCCTCCGCCTCGCAGTCCTCGAAAAAGCCGCCACCAGTTTGGGTACCCTCGGATTCATCTGGGCCACCGTCGTCCTC CTCGGTGGCTTTGCCATCACTCTCGACAAGACAGATTTCTGGCTCATCACCATCATACTCCTCATCGAAGGTGCCCGCATTTTCAGCCGCAGCCACGAGC TCGAATGGCAGCACCAAGCCACCACTTGGTCCTTCTCAGATGCCCGAGTCAACAGCTTCAAAGCAATTAAATCCACCTCTCATTTCCTCGTCCAATTCTT CAACTCAATTCTCCGCCCAATTTCTCCAGCCCAGAAACAGACTTCAGAATCCAACCTGCCACCGAGTTCCTGGCACCATAGGCAGAAGAAAGCTACCGCA ACAACGAATCGGACTTGGACGAGCTCAGACGTTCCGATTCTTCCCTACGGGAGATGGGTTTTCCTTTCGAGGAACATTAGTAAGCTCTTCTATTGGCTTC AACTCGGATCAGCAACTGCCTGCGTTGTTTTGTCACTTATGAAGCTGATCAAGCACAACTATGGCGAGGTATCAAAGGGGGACACTGATAAGAGAAACAG GAAAGCCGCATTAACGATTTTTTACTCCCTGGCGCTAGCAGAAGCTCTGCTTTTTCTAATGGAGAAGGCGTACTGGGAATGGAAAGTGATTTACTGCAGG ATCTTGGAACAGGTGAATCAGGAATGTGAATTGGGTCCCTCAGGAATGGTCTCCATCAAGAGATTCTTCTACGACGCTTACTCCAAGTCTGTTAACGGGA GCATTTTCGACGGGTTGAAGATGGACGTCGTTTCGTTCTCCATGGAGCTTCTAGCTTCTACCTCTCCCGACGAACAGCTTATCGGGGTTCGAGTCCTGCG CCAGTTCGCGGTCAGCGAGAGATTCTCTGAAGACACGCTGCAGAAGATCGGAGTGAATGTATCGGTGGTGGAGAGATTAGTGGAGATGTTGAATTGGAAA GATTTGCTAGAGGAGGAGGTTCGGAGGTCAGCAGCCGAAATCCTGTCGAATCTAGCGGGAAAGAAGCAGAATTCGTTGAGGGTTGCTGGGATACCAGGAG CAATGGAATCAATCTCTTCATTGCTTCAGACCAATAGGGCGTCAAGCAGTTCCGCTGATGAGGTTGGGGAAAAGAAGATCATATTCGACCGTCTGAATTA TGGGTTTTGGACATTTAACCATTTGGGACTTGTAATACTGAAGAAGCTAGCTAGGGATCATGACAACTGTGGCAAGATTGGGAACACGAGAGGTCTACTC CCCAAAATCATTGATTTCACCCACGCCGGGGAGAAATTACTTCGAGATGAAAATGCTTCAGCTTCACATTCGCAAATCCTGACGGTGAAAAGATCTCTCC AGGTGGTCAAAATGCTAGCGAGCACCACGGGAAACACCGGGAAACAGCTGAGGAAAGAGATCTCAGAAGTGGTTTTCACAATTAGTTATATTAGAGACAT TCTGAGGTATGGAGAGAAGCATCCGATGCTGCAGAAGCTGAGCATAGAGATCCTGACGAGCTTGGCGCTCGAAGAAAAGGCGACTGAGAGGATCGGCGGG ACTGGTGGGATCCTGAAGGAGCTGTTTAACATTTTCTTTAACCAAGGAGGAGATAATGACGAGATTCGTCAAAGACATGTGAGGGTTGCTGCAGGAGAAG CTCTGGCGATGCTGGCTTTGGAGAGCAAGAATAACTGTCACAGGATTTTGAAGCTTGAGGTGCTTGACAAGCTTGTTGCTGCTCTTGAGGTTCCTGTGAT GCGAGTGAATGCTGGTAGGATCCTGAGGAACTTGTGCATTTACAGTGGTCCTGACAGCTTCTATAAGCTCAAAGGAGTCACTAGTTGCGCACCTACGGTG CTTAGAGCAATCACATCGGAAGAGAAGAAACTGCAGGAAGTGATGGTGGGACTAGCTGCAGAAGCTTTCAAGTACATGAACTCTCAGGAATCAAGGCTGA TGTTTGAGAGAGCTGGAATGAGTGAAGATGAATTTGCAAACATAATCGTAAGAATCCTAAGAAAGTACGCAGACCCACCGGCAAAAGTGCCAAGGATAAG GAGGTTTTGCATAGAGGTAGCCATTTGGATGATGCAGGAAAGCAAAGCAAACGCAGTCATTTTCAGAAAACTTGGCCTGGATAAGGACCTGGATTGTGTA TTGGAAACTACCTCTGAACTCGAGAGCTTCAACATCTTCTCTGGAACGGTTGGACTGAGCCGTCATACCGTAAGTATTCACTCGTTGGTTGAAACTGCAA TTAGTTTGCTTGCGGAGGAAGAGGATAATCAACGCTGA
AA sequence Show only first row Show all	>Lus10034018 pacid=23154741 polypeptide=Lus10034018 locus=Lus10034018.g ID=Lus10034018.BGIv1.0 annot-version=v1.0 MDGSRAEEGSNSNSIHLELRRLSEIYGSTPTIFEPQISGGGVEKRDSSTANSFSPTTTKITSGGGAPEKKLTLFALRLAVLEKAATSLGTLGFIWATVVL LGGFAITLDKTDFWLITIILLIEGARIFSRSHELEWQHQATTWSFSDARVNSFKAIKSTSHFLVQFFNSILRPISPAQKQTSESNLPPSSWHHRQKKATA TTNRTWTSSDVPILPYGRWVFLSRNISKLFYWLQLGSATACVVLSLMKLIKHNYGEVSKGDTDKRNRKAALTIFYSLALAEALLFLMEKAYWEWKVIYCR ILEQVNQECELGPSGMVSIKRFFYDAYSKSVNGSIFDGLKMDVVSFSMELLASTSPDEQLIGVRVLRQFAVSERFSEDTLQKIGVNVSVVERLVEMLNWK DLLEEEVRRSAAEILSNLAGKKQNSLRVAGIPGAMESISSLLQTNRASSSSADEVGEKKIIFDRLNYGFWTFNHLGLVILKKLARDHDNCGKIGNTRGLL PKIIDFTHAGEKLLRDENASASHSQILTVKRSLQVVKMLASTTGNTGKQLRKEISEVVFTISYIRDILRYGEKHPMLQKLSIEILTSLALEEKATERIGG TGGILKELFNIFFNQGGDNDEIRQRHVRVAAGEALAMLALESKNNCHRILKLEVLDKLVAALEVPVMRVNAGRILRNLCIYSGPDSFYKLKGVTSCAPTV LRAITSEEKKLQEVMVGLAAEAFKYMNSQESRLMFERAGMSEDEFANIIVRILRKYADPPAKVPRIRRFCIEVAIWMMQESKANAVIFRKLGLDKDLDCV LETTSELESFNIFSGTVGLSRHTVSIHSLVETAISLLAEEEDNQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	0	1
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	1.0	0.9687
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	1.4	0.9480
AT2G46550			unknown protein		Lus10012748 [exp]	2.0	0.9329
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	3.3	0.8807
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037988 [exp]	3.5	0.9356
AT1G20180			Protein of unknown function (D...		Lus10017286 [exp]	4.0	0.8979
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	6.9	0.9234
AT2G14095			unknown protein		Lus10035649 [exp]	7.7	0.9303
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	8.7	0.8604
AT2G01300			unknown protein		Lus10004062 [exp]	10.9	0.9093

Compare expression of checked genes

Lus10034018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.