Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47950 82 / 8e-18 HXXXD-type acyl-transferase family protein (.1) AT4G15390 79 / 8e-17 HXXXD-type acyl-transferase family protein (.1) AT1G24430 77 / 5e-16 HXXXD-type acyl-transferase family protein (.1) AT3G30280 68 / 4e-13 HXXXD-type acyl-transferase family protein (.1) AT3G26040 66 / 2e-12 HXXXD-type acyl-transferase family protein (.1) AT5G47980 64 / 1e-11 HXXXD-type acyl-transferase family protein (.1) AT1G24420 57 / 3e-09 HXXXD-type acyl-transferase family protein (.1) AT1G78990 50 / 8e-07 HXXXD-type acyl-transferase family protein (.1) AT5G63560 49 / 1e-06 HXXXD-type acyl-transferase family protein (.1) AT2G19070 44 / 4e-05 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000319 [exp] 336 / 1e-114 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 273 / 4e-90 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 176 / 2e-52 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10025867 [exp] 167 / 4e-50 AT3G26040 155 / 2e-43 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 158 / 1e-45 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 134 / 1e-36 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 131 / 1e-35 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10036042 [exp] 115 / 6e-31 AT4G15390 151 / 1e-42 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 118 / 7e-31 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124128 [exp] 116 / 3e-30 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 116 / 3e-30 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 116 / 5e-30 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 116 / 5e-30 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 116 / 5e-30 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 116 / 5e-30 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 109 / 2e-27 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 105 / 3e-26 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 105 / 5e-26 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 97 / 3e-23 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10034019 pacid=23154674 polypeptide=Lus10034019 locus=Lus10034019.g ID=Lus10034019.BGIv1.0 annot-version=v1.0 ATGCTTGACCAGCTCTCACCCTCCACCTATTCTCCACTCATCTACTTCTACCCATTCAAACCCAACTGTACTACTAGTGATTCCGTATCCTCCAAGCTAA AGGCCTACTCTCCAAGACACTTGATCTCTTCTACCCTCTATCCGGCCGAGTTCAACATAACAACAACCTCTTCACCCACGACTTCCATCAAGGAGTCCCC TTCACCGAGACTCGAATCCCCGGCCACCGCCTTTGAGCCCCTGTGTCTCCATCCACGTAACGGTCCGCAAGTCGCCGTCCAACTCAGCACGTTTGACTGC GGTGGGATTGCCCTTGGGGTTTACTTTTACCACCGGATCATCGACGGGGCCACTTTCAGCGCATTCTTCAAGACTTGGGCCGCTAACGCAAACCCAACCC AAAACCCAAACCTGAGTCAACCGGATTTAGTGAGCGGGCCCTCTGTTTTCCCTCACGAGTCCATCCCAGCCGACATCCAAACGTTCATGGAAAAGCTGTA CTTTCCAGATCAGGGAGCTGGAAGACAGAGGGCGACTAGGAGGTTTGTTTTCAAAAACGAAGCCGTATCAGCGCTGAGGTCGAGCGCAAGGAGTGATAGA GTTGAAACCCCGAGTCGGAATGAAACTCTGTCTACTTTCATTTGGAAGTCCGTGATGCAGGCAGCTGCAGCTTCTGCTTCGCCTAACCCACTAGAGTGTT TCACGCCAGCGGCTGTCCAGTAA
AA sequence Show only first row Show all	>Lus10034019 pacid=23154674 polypeptide=Lus10034019 locus=Lus10034019.g ID=Lus10034019.BGIv1.0 annot-version=v1.0 MLDQLSPSTYSPLIYFYPFKPNCTTSDSVSSKLKAYSPRHLISSTLYPAEFNITTTSSPTTSIKESPSPRLESPATAFEPLCLHPRNGPQVAVQLSTFDC GGIALGVYFYHRIIDGATFSAFFKTWAANANPTQNPNLSQPDLVSGPSVFPHESIPADIQTFMEKLYFPDQGAGRQRATRRFVFKNEAVSALRSSARSDR VETPSRNETLSTFIWKSVMQAAAASASPNPLECFTPAAVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10034019 [exp]	0	1
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10042281 [exp]	15.6	0.7749
AT2G24130			Leucine-rich receptor-like pro...		Lus10022180 [exp]	16.1	0.7575
AT5G48540			receptor-like protein kinase-r...		Lus10014362 [exp]	22.9	0.6831
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	40.2	0.7012
					Lus10002267 [exp]	43.6	0.6634
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	49.7	0.6993
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020250 [exp]	68.4	0.6540
					Lus10024633 [exp]	161.9	0.6532
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10019186 [exp]	230.0	0.6471
					Lus10019815 [exp]	233.6	0.6485

Compare expression of checked genes

Lus10034019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.