Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 1689 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G36380 1644 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 1638 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT3G16340 1542 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 1527 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 1508 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G26910 1460 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G30842 1405 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT2G29940 1394 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 1367 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024061 [exp] 2258 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 2233 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 2036 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 1925 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1825 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 1727 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10014384 [exp] 1590 / 0 AT1G66950 1917 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10008984 [exp] 1559 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10041685 [exp] 1541 / 0 AT1G15520 1271 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048900 [exp] 2055 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 2024 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 2023 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 2012 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 1998 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 1935 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 1932 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1888 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 1885 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 1707 / 0 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10034020 pacid=23154778 polypeptide=Lus10034020 locus=Lus10034020.g ID=Lus10034020.BGIv1.0 annot-version=v1.0 ATGGAGGGTGGAGATCTGTATAAAGCAAGGAACAGTCTACGGCGAGTTGGGTCAGCTTCCATATGGCGAAACAATCCTTCTGACGCATTCTCTGCTTCTA CAAGAGAAGAAGACGACGAGGAGGCCCTGATATGGGCTTCCCTTGAACGACTTCCAACTTATGATCGACTGAGGAAAGGTATATTGGCTAGTGCTTCCAA GACTGAACTCAGCGAGATTGATATCAATAACCTTGGTGTCGATGAAAGGAAAGTGTTGCTAGATCGCCTTGTTAAGGTTGCTGATCATGATAACGAGAAG TTCTTGCTCAAACTCAAAAACAGAATTGACAGAGTTGGAGTTGAATTGCCAACCATTGAAGTTCGCTATGAGAATCTCAACGTTGAAGCTGAAGCTGAAG TTGGGAGTAAAGCTCTACCTACATTCATCAACTTCACTGTTGGGATATTCCAGACTCTCTTCAATGCTCTCCATCTCCTTCCTAACAACAAGAGACATCT CACAATCCTCAAGGATATTAGTGGAGTCATCAAGCCATCAAGAATGACTTTGCTTCTTGGTCCTCCAAGCTCAGGGAAAACAAGTCTGTTGTTAGCTCTT GCAGGAAGATTGGATCCAAATCTTAAGGTTTCAGGGAGAGTTACTTATAATGGTCATGAGATGAATGAATTCATTCCACAGAAAACTTCAGCCTATATTA GTCAGCATGATGTTCACATGGGAGAGTTGACTGTCAGGGAAACTTTCTCCTTTGCAGCTAGAGTCCAGGGAGTTGGATCTTTTCATGATATGTTGGCTGA GTTGTCTAGAAGAGAAAAGGCAGCAAATATCAAGCCGGATCCTGATATTGATGTTTTCATGAAGGCTGTTGCAACAGAAGGCTTAGAGAGCAATGTTGTG ACTGACTATGTCTTGAAGATATTGGGGCTTGAAGGTTGTGCAGACACTCTTGTGGGTGACGAAATGATCAGAGGTATCTCCGGAGGACAAAGAAAGCGTG TCACAACGGGTGAAATGCTAGTTGGACCGGCAAGAGCCTTGTTCATGGACGAAATATCAACTGGGTTGGATAGTTCTACAACTTTTCAAATTGTGAATTC GCTCAAGCAGTCTAATCATATCCTGAATGGAACTTCCATCATCTCACTCCTCCAGCCTGCTCCAGAGACATATGACCTCTTTGATGACATCATTCTCTTA TCAGATGGGCAGATTGTGTACCATGGCCCTCGCGAAAATGTGCTTGAATTCTTCGAGCATATGGGATTCAAGTGTCCTGACAGAAAAGGAGTTGCTGATT TCTTGCAGGAAGTCACATCTAAGAAAGATCAGAAGCAGTATTGGGCTAGAAGGGATCAGCCTTACCATTATGTAACGGTGAAGGAGTTTGCCGAATCATT CCAGTCCTTCCACGTGGGAAGGCGAATCAGGGATGAACTCTCAGTTGCTTATGACCGGACCAAGAGCCACCCTGCTGCTTTGGCTACCAAGAAATATGGA ATTGGAAGCAAGGAATTGCTCAAAGCCAACTTCTCCAGGGAGTTCTTGCTTATGAAGAGAAACTCTTTTGTCTATGTATTCAAGCTTACACAACTCTTCA TTATGGCAATTGTGACAATGACTGTCTTCTTCCGCACTGAGATGTCCCGGGAAACAGTCAATGATGGAGGAATGTATGTGGGTGCTCTCTTCTTAACTCT GGCTATGATCATGTTTAATGGTATGGCTGAGCTTTCGATGACAATTGCAAAGCTTCCCGTGTTCTATAAGCAAAGGAATCTATTTTTCTACCCACCTTGG GTTTATTCCATTCCTCCATGGATCCTCAAGATTCCTGTAACCTGTGCTGAAGTAGCTGTTTGGGTCTTCCTAACTTACTATGTTATTGGGTTTGATCCCA ACTTTGGAAGGCTCGTTAGGTTGTATGTGTTGCTGGTAGCTATTAACCAGATGGCTTCTGCACTGTTTCGAGCCATTGGTGCGCTTGGAAGGCACATGAT TATAGCAAACACCTTCGGTTCATTTGTTCTGATCCTATTGTTTACAATGAGTGGCTTCGTCTTGTCACGAGAGGATGTGAAGAAATGGTGGATTTGGGCT TTTTGGGCGTCACCCATGATGTATGCGCAGAATGCACTTGTAGTTAACGAATTCCTTGGAAGTAGTTGGAGCCATATTCCTCCTAACTCAAAAGAATCAC TAGGACTTCAAGTGTTGAAGTCTCGTGGTTTCTTCACTGAACCGCATTGGTATTGGCTGGGGGTTGGATCATCTCTAGGATTCCTCTTGCTATTCAACAT CGTGTTTTCGTCTGCTCTTACTTTCTTGGGCGAGTATGATAAACCTAAAGCAATCATATCTAAAGACTCTGATGAAGCTACCACGGTCGAGATGTCACAA TGTGGAACTCGTGGTTCCATATCAGAAGATGACGAGGCTAGTGGAAGCAAGAAGAAAGGAATTGTTCTTCCATTTGAGCCTCATTCGATCACTTTTGAGA ACGTTATCTACTCGGTTGACATGCCACCGGAAATGAAATCCCAAGGTGTTGCTGAAGATAAGCTGGTCCTTCTCAAGGGTGTTAGTGGTGCATTTAGGCC AGGTGTCTTGACAGCTCTTATGGGAGTTAGTGGTGCTGGTAAAACAACACTTATGGATGTGCTTGCTGGAAGGAAAACCGGTGGATACATTGAAGGAGAC ATAACAATTTCAGGGTATCCTAAAAAGCAAGAAACTTTTGCCAGGATTTCAGGTTATTGCGAGCAAAATGATATCCACTCTCCACAGGTTACAGTATACG AGTCATTAGTGTACTCAGCTTGGCTTCGCCTGCCTCAAGAAGTGGATGAAAAAACAAGAATGATGTTTGTGGAGCAAGTGATGGAGCTGGTGGAGCTAAA CCCATTACGCAATTATTTAGTGGGACTACCTGGGGTGAGTGGGTTGTCTACAGAGCAAAGGAAGAGGTTAACAATAGCAGTCGAATTGGTAGCGAACCCA TCAATCATCTTCATGGATGAGCCAACCTCGGGGTTAGATGCTAGAGCTGCTGCAATTGTTATGAGGACAGTGAGGAACACTGTGGATACTGGTAGAACTG TCGTTTGTACCATCCATCAGCCTAGTATTGATATCTTTGAAGCATTTGATGAGTTGTTACTTTTGAAGAGAGGAGGACAAGAGATATATGTGGGTCCACT GGGGCGCCATTCTATCCATTTGGTCAAGTACTTTGAAGAGATCGATGGAGTTGGTAAGATAAAAAATGGGTATAATCCAGCAACTTGGATGTTGGAAGTA ACAACAACAGCACAAGAAATGGCAATGGGAGTTGATTTTACTGAGATTTACAGAAATTCTGATCTCTACAAGAGAAACAAGGCATTGATTAAGGACTTGG GCAAGGCATCCCCAGGGTCCAAAGAACTCTACTTTGCAACGCAATACTCACAGTCATTCTTGACACAATTATCGACACAGCAAGACTTATTCAACGCGTT GGGATCATTGTTTGTATCTGTGCTATTCAACGGAGTGCAAAATGCTTCAGCAGTACAACCAGTTGTTGCCATTGAAAGAACTGTCTTCTATCGTGAACGT GCTGCAGGAATGTATTCAGCACTGCCTTATGCTTATGCTCAGGTGTTAATTGAGCTTCCATATGTCTTTGCTCAATCAGTTATGTTCGGCGTTGTAACAT ACTCCATGATTGGATTCGAGTGGGAATTAAAGAAGTTCTTGTGGTACATATTCTTCATGTACTTGACCCTCCTCTACTTTACCTTGTACGGGATGATGAC AGTCGCAATAACCCCAAACCACCACATAGCAGCCGTCATCTCTTCCTTTTTTTACTCTTTCTGGAATATCTTTTCTGGGTTCATGATTCCAAGACCCAGG ATGCCAATTTGGTGGAGATGGTACTATTGGGCTGATCCCCTCTCATGGACGTTATATGGGTTGTTGACTTCTCAATATGGAGATGTGAAGACCACCATGG AATCAGGTCTAACTGTGGAGGAATTCTTGAGATCTTACTTTGGTTTCAACCATGATTTCTTGGGAGTTGTTGCTGCTGTTATGGTTGCTTTAGTTGTTGG CTTTGTCGTCATCTTTGCCATTGCCATCCGCTCTTTCAACTTCCAGAGAAGATAG
AA sequence Show only first row Show all	>Lus10034020 pacid=23154778 polypeptide=Lus10034020 locus=Lus10034020.g ID=Lus10034020.BGIv1.0 annot-version=v1.0 MEGGDLYKARNSLRRVGSASIWRNNPSDAFSASTREEDDEEALIWASLERLPTYDRLRKGILASASKTELSEIDINNLGVDERKVLLDRLVKVADHDNEK FLLKLKNRIDRVGVELPTIEVRYENLNVEAEAEVGSKALPTFINFTVGIFQTLFNALHLLPNNKRHLTILKDISGVIKPSRMTLLLGPPSSGKTSLLLAL AGRLDPNLKVSGRVTYNGHEMNEFIPQKTSAYISQHDVHMGELTVRETFSFAARVQGVGSFHDMLAELSRREKAANIKPDPDIDVFMKAVATEGLESNVV TDYVLKILGLEGCADTLVGDEMIRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLKQSNHILNGTSIISLLQPAPETYDLFDDIILL SDGQIVYHGPRENVLEFFEHMGFKCPDRKGVADFLQEVTSKKDQKQYWARRDQPYHYVTVKEFAESFQSFHVGRRIRDELSVAYDRTKSHPAALATKKYG IGSKELLKANFSREFLLMKRNSFVYVFKLTQLFIMAIVTMTVFFRTEMSRETVNDGGMYVGALFLTLAMIMFNGMAELSMTIAKLPVFYKQRNLFFYPPW VYSIPPWILKIPVTCAEVAVWVFLTYYVIGFDPNFGRLVRLYVLLVAINQMASALFRAIGALGRHMIIANTFGSFVLILLFTMSGFVLSREDVKKWWIWA FWASPMMYAQNALVVNEFLGSSWSHIPPNSKESLGLQVLKSRGFFTEPHWYWLGVGSSLGFLLLFNIVFSSALTFLGEYDKPKAIISKDSDEATTVEMSQ CGTRGSISEDDEASGSKKKGIVLPFEPHSITFENVIYSVDMPPEMKSQGVAEDKLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD ITISGYPKKQETFARISGYCEQNDIHSPQVTVYESLVYSAWLRLPQEVDEKTRMMFVEQVMELVELNPLRNYLVGLPGVSGLSTEQRKRLTIAVELVANP SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSIHLVKYFEEIDGVGKIKNGYNPATWMLEV TTTAQEMAMGVDFTEIYRNSDLYKRNKALIKDLGKASPGSKELYFATQYSQSFLTQLSTQQDLFNALGSLFVSVLFNGVQNASAVQPVVAIERTVFYRER AAGMYSALPYAYAQVLIELPYVFAQSVMFGVVTYSMIGFEWELKKFLWYIFFMYLTLLYFTLYGMMTVAITPNHHIAAVISSFFYSFWNIFSGFMIPRPR MPIWWRWYYWADPLSWTLYGLLTSQYGDVKTTMESGLTVEEFLRSYFGFNHDFLGVVAAVMVALVVGFVVIFAIAIRSFNFQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10034020 [exp]	0	1
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	3.7	0.9345
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	6.9	0.9263
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	7.3	0.9240
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10000318 [exp]	7.7	0.9047
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	8.9	0.9228
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	11.2	0.9191
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	11.7	0.9141
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	12.0	0.9071
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10038392 [exp]	13.5	0.8869
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10029409 [exp]	13.7	0.9061

Compare expression of checked genes

Lus10034020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.