Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19020 353 / 2e-113 MEF18 mitochondrial editing factor 18 (.1) AT2G22410 261 / 2e-78 SLO1 SLOW GROWTH 1 (.1) AT3G06180 244 / 3e-77 Ribosomal protein L34e superfamily protein (.1) AT5G66520 254 / 1e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 247 / 1e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15300 245 / 6e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 244 / 2e-73 MEF21 mitochondrial editing factor 21 (.1) AT4G33990 248 / 9e-73 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 239 / 5e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 242 / 8e-71 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004432 [exp] 341 / 1e-114 AT3G06180 241 / 3e-80 Ribosomal protein L34e superfamily protein (.1) Lus10010901 [exp] 270 / 2e-84 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031430 [exp] 258 / 2e-80 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007341 [exp] 251 / 5e-76 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029344 [exp] 250 / 7e-75 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030225 [exp] 242 / 1e-74 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 251 / 2e-74 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 246 / 2e-74 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029793 [exp] 247 / 2e-73 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029900 [exp] 461 / 4e-155 AT5G19020 789 / 0.0 mitochondrial editing factor 18 (.1) Potri.005G202600 [exp] 261 / 5e-80 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G065500 [exp] 258 / 3e-78 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 258 / 6e-78 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 253 / 6e-77 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 255 / 5e-76 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 256 / 7e-76 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 250 / 5e-75 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 248 / 5e-75 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G019500 [exp] 251 / 6e-75 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034022 pacid=23154683 polypeptide=Lus10034022 locus=Lus10034022.g ID=Lus10034022.BGIv1.0 annot-version=v1.0 ATGCCCACTGCTCCCCCCTTCTCCTCAAAACCCTCAATCTCCTCCTCTGCTACTTCATCATCCTCTTCTCCTTCCTCCTCATCCTCATCTGTTCTTCTCT GCAAGCACTCTCCTTCCGCCACTCTAGACCTTGTCATACTCATCCTAGTCCTCTTCTCTGGGGCTTTCCTCATCACCTCTTACTTCTCCTACATCTTCAA CTCCGTCTCCCTCCTCCTCGCCCATTCATCCATCCAGCTCCCTCCTGCCTCTTACATCTTCGGCTTCCTCGCCTTCTTCCTCTTCTCCTTTCTCTTCCTC GAGCTCTGCTGCGGCCCCAGATCTCGCAAGTGCGATAACTCCCGATGCAAAGGCTTGAAGAAGGCCATGGAGTTCGATTTGCAGCTCCAGACCGAGGATT GCGTCAAATCTAATGTCTCCAAGGAGATCGATAACCTTCCTTGGAAAGGCGGAACTGAGAGGAACCCTGATTATGAGTGCTTGAGGGCTGAGCTCAGGAA GATGGCTCCTCCTAATGGTAGGGCTGTTCTCCTTTTCAGGGCTAGGTGTGGCTGCCCCGTCGCTAAATTGGAAGGCTGGGGTCCTAAGCGTGGCCGCCGC CATAAAAAGGATTTGGCCAATTGCTGTATTGATTGCCGGCATATGAGAGTCATTGGATTGCATTCCGGATGGCAATGGCCATGGCTCTGGGAAATAACGT GGCTGCTGCAAACGGGGATCTCCATCATCGCTAACTGGTTGGCTGCTGCTGCTCAGATACGAGCCGGCGGGCTCCTCAGCATTGTCATCATCCTGATATC CCTTTTAGAATATAGGATCCAGTTCTTCGCTTTCACACATAGACAAAGAGATGTGTTTTCGTGGAGCACAATGATATCTGGTTACACACAGAGCGAGCAG CACGGTATGGCAATAGAGTTATTCCATCAGATGGTAGAAATCGGTATCCAGCCAAATGAGGTGACGATGGTGAGTGTGTTCTCGGCAATTGCGTCTTTAG GAACACTCCAAGACGGAATTCGGGCTCACCAATACGTACTTGATAGCCCTATTCCTCTGAATGACAATCTGTGTGCTTCAATTATTGACATGTATGCCAA ATGTGGGAGTATAAGCAATGCATTGGAAATGTTTCATCAAATCCGTAACAAGGCAGTTAGCGTCTCACCATGGAACGCCATTATATGCGCTTTGGCTATG CATGGACATGCAAATCTATCTCTTGAGATATATGCAGACCTGCAAACTCGAGGTATCAAACTCAATGCGATTACATTCATTGGGGTCCTCGGTGCCTGTT GCCATGCTGGGATGGTGGATCTGGGGAAGAGATATTTCGAGAGTATGAAACGTGAGCATAATGTAAATCCTGACATTAAGCACTACGGATGCATGGTTGA TCTTCTGGGGAGATCTGGTCAGCTCGAAGAAGCAGAGAAGCTGATAAGGAGCATGCCGATGGAAGCGGATGTGGTTATATGGGGCACACTGTTGGCTGCT TGCAGGACTCATGAAAATGTGGATGTGGGAAAACGAGCTGCCGAAAATTTGGCAAGATTGGAGCCATCTCATGGCGCAAGCAGGGTTCTTTTGTCCAATC TCTATGCAGATGCAGGGAAGTGGGAGGATGCATTTTCAGTAAGGAAAACAATGCAAAGCAATAGAATGCAGAGATTGCCTGGATATAGTGGTATAATATG A
AA sequence Show only first row Show all	>Lus10034022 pacid=23154683 polypeptide=Lus10034022 locus=Lus10034022.g ID=Lus10034022.BGIv1.0 annot-version=v1.0 MPTAPPFSSKPSISSSATSSSSSPSSSSSSVLLCKHSPSATLDLVILILVLFSGAFLITSYFSYIFNSVSLLLAHSSIQLPPASYIFGFLAFFLFSFLFL ELCCGPRSRKCDNSRCKGLKKAMEFDLQLQTEDCVKSNVSKEIDNLPWKGGTERNPDYECLRAELRKMAPPNGRAVLLFRARCGCPVAKLEGWGPKRGRR HKKDLANCCIDCRHMRVIGLHSGWQWPWLWEITWLLQTGISIIANWLAAAAQIRAGGLLSIVIILISLLEYRIQFFAFTHRQRDVFSWSTMISGYTQSEQ HGMAIELFHQMVEIGIQPNEVTMVSVFSAIASLGTLQDGIRAHQYVLDSPIPLNDNLCASIIDMYAKCGSISNALEMFHQIRNKAVSVSPWNAIICALAM HGHANLSLEIYADLQTRGIKLNAITFIGVLGACCHAGMVDLGKRYFESMKREHNVNPDIKHYGCMVDLLGRSGQLEEAEKLIRSMPMEADVVIWGTLLAA CRTHENVDVGKRAAENLARLEPSHGASRVLLSNLYADAGKWEDAFSVRKTMQSNRMQRLPGYSGII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10034022 [exp]	0	1
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10023168 [exp]	5.3	0.8597
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	5.7	0.8577
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	6.9	0.8325
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	8.4	0.8281
AT4G14030		SBP1	selenium-binding protein 1 (.1...		Lus10035760 [exp]	8.8	0.8050
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	13.9	0.8345
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	14.5	0.8331
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	16.2	0.8443
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	18.7	0.8217
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10022499 [exp]	19.2	0.8101

Compare expression of checked genes

Lus10034022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.