Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06170 564 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT1G16180 441 / 1e-153 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT3G24460 140 / 3e-37 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT2G33205 130 / 1e-33 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 127 / 1e-32 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004430 [exp] 684 / 0 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10026111 [exp] 448 / 1e-156 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10008709 [exp] 444 / 8e-155 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10017728 [exp] 132 / 5e-34 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10033091 [exp] 130 / 8e-34 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 102 / 1e-23 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10011768 [exp] 96 / 2e-21 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201900 [exp] 567 / 0 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G186500 [exp] 449 / 7e-157 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 445 / 3e-155 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.018G076000 [exp] 139 / 6e-37 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G174200 [exp] 121 / 2e-30 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [flax] [poplar] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Lus10034023 pacid=23154835 polypeptide=Lus10034023 locus=Lus10034023.g ID=Lus10034023.BGIv1.0 annot-version=v1.0 ATGTCGTGCTTGGCATGCCTTCCGATGTGCTGTGCGTCCCTCACCTGCGGCCTATGCTCGTCGGTGGCTTCCGGCATCTCCAAGAAATCGGCGCGTATTG CTTACTGCGCTCTCTTCGGCTTCTCTTTGGTCGTTTCTTGGATTTTCCGCGAAGTTGGAGGCCCTCTCCTCGAGAAATTCCCCTGGATAAACTCATCTGA TGGCCAGTCGAAGGAATGGTTTCAAATGCAAGCTGTGCTTCGCGTCAGCCTCGGAAATTTCTTATTTTTCGGAATTTTGGCTCTGATAATGATCGGCGTT AAGGACCAGAATGACAAACGCGATGCTGTTCATCACGGTGGATGGATGGCAAAGATAGTGATCTGGACTCTGCTTGTTGTGCTCATGTTTTTCCTTCCAA ATGTCGTGGTTTCTGTATATGGAGTTCTGTCCAAGTTTGGAGCAGGGTTGTTTTTGTTGGTTCAAGTTATTATGCTACTGGATTTTACACACAGATGGAA TGATGCATGGGTTGAGAAAGACGAACAGAAATGGTATGTTGCTTTACTTGTTATATCAATTGGATGCTACATGGGGGCATTTGCGTTCTCCGGGATCCTA TTTATATGGTTCAATCCATCTGGCAACGATTGTGGTGTTAATATCTTCTTCATCGTCATGACTATGATTCTTGCATTTTCTTTTGCTGTAATAGCTCTGC ATCCTGCGGTGAATGGAAGCCTGTTGCCTGCTTCAGTTATATCAATTTACTGTGCCTATGTTTGCTACACGGGTCTGTCAAGTGAACCTCGTGATTATGC TTGCAATGGACTCAATAAGTCAAAGGTGGTCTCCGTAGGGACGCTTGTTCTCGGGATGCTCACAACAGTTCTTTCAGTCTTATACTCAGCTCTTCGTGCT GGGTCTTCAACAACTTTCTTGTCTCCATCCCCACCATCTTCTCCCAGGGCATCAGGTGGAAGCAAACCTTTGCTTGGAGATGAAGAGTTGGAAGAAGGAA AGGGAAAGGAGAAAGAAACCGAGTCGCGTCCTGTCAGTTACTCATATTCATTCTTCCACCTGATATTCGCCTTGGCTAGCATGTACTCAGCCATGCTCCT TTCCGGGTGGACCAGCTCATCGGAGAGCGCCGATCTCATTGACGTAGGTTGGACATCGGTATGGGTAAGGATCTGCACCGAATGGGCAACTGCAGGACTC TACATATGGACTCTGGTGGCGCCATTGCTTTTCCCGGATAGAGAGTTCTATTAG
AA sequence Show only first row Show all	>Lus10034023 pacid=23154835 polypeptide=Lus10034023 locus=Lus10034023.g ID=Lus10034023.BGIv1.0 annot-version=v1.0 MSCLACLPMCCASLTCGLCSSVASGISKKSARIAYCALFGFSLVVSWIFREVGGPLLEKFPWINSSDGQSKEWFQMQAVLRVSLGNFLFFGILALIMIGV KDQNDKRDAVHHGGWMAKIVIWTLLVVLMFFLPNVVVSVYGVLSKFGAGLFLLVQVIMLLDFTHRWNDAWVEKDEQKWYVALLVISIGCYMGAFAFSGIL FIWFNPSGNDCGVNIFFIVMTMILAFSFAVIALHPAVNGSLLPASVISIYCAYVCYTGLSSEPRDYACNGLNKSKVVSVGTLVLGMLTTVLSVLYSALRA GSSTTFLSPSPPSSPRASGGSKPLLGDEELEEGKGKEKETESRPVSYSYSFFHLIFALASMYSAMLLSGWTSSSESADLIDVGWTSVWVRICTEWATAGL YIWTLVAPLLFPDREFY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	0	1
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	3.6	0.8697
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031746 [exp]	4.5	0.8687
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	4.9	0.8523
AT1G48440			B-cell receptor-associated 31-...		Lus10001080 [exp]	5.0	0.8488
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	5.2	0.8634
AT5G35080			unknown protein		Lus10008819 [exp]	6.5	0.8396
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10015144 [exp]	6.9	0.8386
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	9.5	0.8373
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	10.2	0.8395
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	10.5	0.8293

Compare expression of checked genes

Lus10034023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.