Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14240 597 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT4G14230 586 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 536 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 384 / 7e-130 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 373 / 1e-125 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 369 / 4e-123 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 340 / 2e-111 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT3G13070 57 / 2e-08 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT1G55930 54 / 1e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004429 [exp] 856 / 0 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 577 / 0 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10028010 [exp] 555 / 0 AT1G03270 635 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 385 / 2e-130 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 379 / 5e-127 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 379 / 6e-127 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 360 / 9e-120 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 330 / 4e-111 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 323 / 9e-106 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202100 [exp] 712 / 0 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.010G030200 [exp] 686 / 0 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.009G082300 [exp] 385 / 2e-130 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 387 / 7e-130 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 382 / 3e-129 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 378 / 9e-128 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 321 / 1e-103 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 54 / 2e-07 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Potri.002G260401 [exp] 46 / 2e-06 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.008G188000 [exp] 42 / 0.001 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034024 pacid=23154832 polypeptide=Lus10034024 locus=Lus10034024.g ID=Lus10034024.BGIv1.0 annot-version=v1.0 ATGCATCCGCTCAACGCGTTGATCGCGACGAGGATGGTCTCCACTGCGGTCCAATTGGAGTCCGGCAACGAAATACCTTACGGCACTGTCACGTGGTTTG TTTACGCCGGAATCTCTTGCTTCCTCGTCATCTTCGCCGGCCTCATGTCCGGCCTTACTCTGGGCCTCATGTCCCTCAGTCTTGTTGACCTCGAAATCCT TCAGCGCAGCGGTTCAAATTCCGAGAAGAAACAAGCTGCGGGTATACTTCCGGTGGTTCAGAAACAGCATCAACTTCTAGTGACTTTACTTCTGTGTAAT GCAGCTGCAATGGAGGCTCTTCCTATATACCTGGATAAGATGTTCAATCAATATGTTGCAATCATACTCTCTGTAACTTTTGTTCTTTTCTTTGGCGAGG TTATTCCACAAGCAATATGCTCTAGATATGGACTCGCCGTAGGTGCTAATCTTGCTTGGCTTGTACGAGTTTTGATGATAATTTGCTATCCCATAGCGTT TCCCATCGGAAAGATTTTGGACTGTGTACTGGGACACAATGAAGCTCTATTTAGGCGGGCTCAGCTGAAAGCCCTTGTTTCAATCCACAGCCAGGAGGCT GGGAAAGGCGGTGAACTCACACATGATGAGACAACAATCATTGCCGGGGCATTAGATTTAACTGAAAAGACTGCTGAAGAGGCTATGACACCTATAGAAT CAACTTTCTCCTTAGATGTCAACTCCAAGTTGGACTGGGAGGCTATGGGAAAAATTCTTGCAAGAGGGCATAGCCGAGTTCCTGTCTATTCTGGAAATCC CAGGAATATTATTGGACTGCTTCTGGTGAAAGCCCTCCTCACAGTAAGACCCGAAACTGAGACCCCAGTCAGTGCAGTCTCCATCCGAAGAATTCCAAGG GTGCCATCAGATATGCCATTGTACGATATACTGAACGAGTTTCAGAAGGGGAGCAGTCATATGGCCGCTGTTGTCAGGGCCAAAGGTAAAAGCAGGGATT TCCCACTTGGAAAAGATGCTGAAAAACAAGAAGAAAACAAAGTAACTGGGGCAGACCGTCAGTTAACTACTCCTTTGCTGTACAAGGTGGAGGAAACACC TGGTAGCATTGTTGTTGATATTGATAGGTTTTCAAGGGCAGCATATGGATTGCCCTTACAATCAGAGGATATTGAAGATGGTGAAGTCATTGGTATTATC ACCTTAGAAGATGTTTTCGAAGAACTTCTGCAGGAGGAGATTGTGGATGAAACCGATGAATACGTAGATGTTCATAAAAGAATTCGTGTGGCAGCTGCTG CTGCAGCATCGTCGGTGGCTCGGGCTCCATCGAGTCGGAGGTTAATAACAGCCAACAAGGGAGCTGGAGGACAGGGTAAATCGGGGCTGACTCCGAGAAA AGGCGACCACGACTCGAGTACCCCGAGGTTAGGAGGTGCTGATACTGCAGAACCTCTGGGGAACAAGAAATCATAA
AA sequence Show only first row Show all	>Lus10034024 pacid=23154832 polypeptide=Lus10034024 locus=Lus10034024.g ID=Lus10034024.BGIv1.0 annot-version=v1.0 MHPLNALIATRMVSTAVQLESGNEIPYGTVTWFVYAGISCFLVIFAGLMSGLTLGLMSLSLVDLEILQRSGSNSEKKQAAGILPVVQKQHQLLVTLLLCN AAAMEALPIYLDKMFNQYVAIILSVTFVLFFGEVIPQAICSRYGLAVGANLAWLVRVLMIICYPIAFPIGKILDCVLGHNEALFRRAQLKALVSIHSQEA GKGGELTHDETTIIAGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPRNIIGLLLVKALLTVRPETETPVSAVSIRRIPR VPSDMPLYDILNEFQKGSSHMAAVVRAKGKSRDFPLGKDAEKQEENKVTGADRQLTTPLLYKVEETPGSIVVDIDRFSRAAYGLPLQSEDIEDGEVIGII TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLITANKGAGGQGKSGLTPRKGDHDSSTPRLGGADTAEPLGNKKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14230			CBS domain-containing protein ...		Lus10034024 [exp]	0	1
AT3G51370			Protein phosphatase 2C family ...		Lus10041861 [exp]	1.4	0.7971
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	2.4	0.7820
AT5G15880			unknown protein		Lus10034091 [exp]	7.4	0.7606
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10010071 [exp]	13.1	0.7674
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10014814 [exp]	15.4	0.7050
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10028417 [exp]	15.6	0.7473
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10034184 [exp]	18.2	0.7597
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	20.1	0.7632
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10008055 [exp]	21.6	0.7403
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	22.4	0.7322

Compare expression of checked genes

Lus10034024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.