Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19050 488 / 4e-174 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004426 [exp] 605 / 0 AT5G19050 544 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202300 [exp] 517 / 0 AT5G19050 489 / 1e-174 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF08538 [flax] [poplar] DUF1749 Protein of unknown function (DUF1749)
Representative CDS sequence Show only first row Show all	>Lus10034026 pacid=23154714 polypeptide=Lus10034026 locus=Lus10034026.g ID=Lus10034026.BGIv1.0 annot-version=v1.0 ATGAATCTCTCGTTGTCTTCTTCCACTTCTCTGTCGTCATCCTCGTCTCCGTCCGCTTCGTCATCTTCCGCCGGCGGAACCTCATGGTTCTCCGGCATTG TCCGTGGCCGTGCGGACAGGTCAGCGAGCATGAAAATGACCAGTAATCTGCCCGCTGCCGAGAACGCTGGGCCTATCACGGGAAAAAACCAGTTCCGTGG TGTGCTTTTCAAATACGGTCCCAAGGCTATTCAGGTTGCATTTAAAACGGGAGAACATAAACAACAGGTCATTTTCATCGGTGGACTGACTGATGGTTTT CTTGCAACTGAATATTTGGAGCCTCTTGCAATAGCTCTGGATAAGGAGAAATGGTCACTTGTTCAATTCCTCATGTCATCCTCATATAGTGGATTTGGCA CCTCCAGCTTAAAACAAGATGGCACAGAGCTGGATCAGTTGATAAGTCATTTCATCAACAAAGAAAACTCCGAGGGGGTGATTCTTATTGGGCATAGTAC TGGTTGTCAGGATATCGTGTATTACCTGCGTTCAAATGCTGCCTGTTGCAGAGCAGTACGTGGTGCCATTCTGCAGGCTCCAGTGAGTGATCGGGAATAC AAAGCTACCCTTCCTGAAACGGCTGCTATGATTGACTTGGCTTCGTCTATGATAGCAGAGGGCAAGGGTGCAGAACTAATGCCTAGGGATGCTGATCCGT GTGCTCCAATAACTGCTTCCAGGTATCACTCCCTTAGTTCGTATATGGGAGACGATGACATGTTCAGTTCTGATCTGACAGATGACCAACTGAGATTGAG ACTTGGGCACATGTGCAACACGCCTTGCCAGGTTATATTCTCCATGGGTGACGAATACGTGCCGGAATATGTTGACAAAAAGGCATTGGTAGAAAGGTTG TGCAGAGCAATGGGAGGGGCAGAGAAGGTGGAAATAGAGCACGGGAATCACTCACTTTCCAATAGAGTGGATGAAGTTGTAAAGGCAATTATGGATTTCA TCAGAGGAGAAGGACCCAAAGGCTGGGATGATCCATGGGCGTAG
AA sequence Show only first row Show all	>Lus10034026 pacid=23154714 polypeptide=Lus10034026 locus=Lus10034026.g ID=Lus10034026.BGIv1.0 annot-version=v1.0 MNLSLSSSTSLSSSSSPSASSSSAGGTSWFSGIVRGRADRSASMKMTSNLPAAENAGPITGKNQFRGVLFKYGPKAIQVAFKTGEHKQQVIFIGGLTDGF LATEYLEPLAIALDKEKWSLVQFLMSSSYSGFGTSSLKQDGTELDQLISHFINKENSEGVILIGHSTGCQDIVYYLRSNAACCRAVRGAILQAPVSDREY KATLPETAAMIDLASSMIAEGKGAELMPRDADPCAPITASRYHSLSSYMGDDDMFSSDLTDDQLRLRLGHMCNTPCQVIFSMGDEYVPEYVDKKALVERL CRAMGGAEKVEIEHGNHSLSNRVDEVVKAIMDFIRGEGPKGWDDPWA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10034026 [exp]	0	1
AT5G15140			Galactose mutarotase-like supe...		Lus10015365 [exp]	2.4	0.8950
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038635 [exp]	6.6	0.8955
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	12.5	0.8923
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	14.7	0.8918
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	15.0	0.8849
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009432 [exp]	16.6	0.8544
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	29.5	0.8898
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	34.3	0.8719
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10021933 [exp]	35.5	0.8466
AT2G34250			SecY protein transport family ...		Lus10010932 [exp]	39.6	0.8612

Compare expression of checked genes

Lus10034026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.