Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06150 743 / 0 unknown protein AT5G19060 690 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004424 [exp] 1228 / 0 AT3G06150 747 / 0.0 unknown protein Lus10026459 [exp] 766 / 0 AT5G19060 673 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202500 [exp] 829 / 0 AT3G06150 721 / 0.0 unknown protein Potri.008G202400 [exp] 818 / 0 AT3G06150 734 / 0.0 unknown protein Potri.010G030900 [exp] 818 / 0 AT3G06150 739 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034027 pacid=23154788 polypeptide=Lus10034027 locus=Lus10034027.g ID=Lus10034027.BGIv1.0 annot-version=v1.0 ATGCCCGAGAAGGGAACCAACTCTCCCAGGTCCAAGCTCTCCCACCTCCCATGGCTTTTCCGCCCCAGCCCTCTCCATCAATGGCGCCTTCACTTCCTGA CAGCTCTAGTCTTCCTCGGCATGGTGCTTGTTTGGAGCTTAGACGGATGCACCATTAAGAGCGTCGTCCAATCTTTGAGGTCTGACCCGCACCGCCACCA GCTCCTCACTGTCAAGTTCCGTCCCCAACCCACCAATCTAGCTCAAGAGAACACCCAGCCAAACTTCACCAACGGCACCGCCGTTATTTTCTCCGCCGAC GCTCCCACTCCTCTTCCTTTACCCCGAGACGACGTTTCCGCCGGTATCGCCAACGGAAAATCTGCCTCCAGCTATCCGGATGATGAGTTGTTACAGATGC CGACAAGAATGAAAGAAGATTCCGCCGCCGCCGGCGATGCGAAATGGGCGACGGCGGAGCTCGAGCCTAACTTCACCTCCGGCCTGCTTTCACGGTGGCT GGCACCCGGCGGGGAGCCTTGCATGGATGAACGGACGGCCGACGTCTCATTTCCCGATTTTGACGGGAAGGAGGGTACAGGTACTACTGTGGAGCTCACC GCAGGAGATTCACACGAGTTCGTTTTCCGGGCGGTGGACGAGTCGAGAAACCCTCGGTGCTCCGGCGGGGATTACTTCGAGTCGGATCTTTCTGGAGAGT CGTGGAAGTCTAGACCTCTGGTTAAAGATTTCGGAAACGGTTCGTACTCAATCTCCCTCCAAATCCACCCCGATTTCGCCGGAGATTACGATCTAACTCT GATCCTACTCTACCGCCACTTCGAAGGTCTAAAATTCTCCCCCAAAAGATTCGTATTCAGCAAAGAACTGAGGAAGCTCCGAATCAGGTTCGTTAAAACT CACACTCAGTTACCGGAGCTAAAATTCTGCTCGGGAGCTGATTTCGATAGAAATTTGTGGGTCGGGAGATGGACTAGGCACGGTAAGAACGACGATTGTC AGATCAGTAGAGACGGCCGGGACCGGTGCTTGCCGGCGGATTTCCCTTGCCGGAATCCATGGTGTAATGGATCGTTAGGCTCGCTGGAGAGCAATGGTTG GGTCTATTCGAGTCATTGCTCTTTCAAGCTGTTTCAACCCGATTCGGCTTGGAACTGTCTCAAGAACAGATGGATTTTCTTCTGGGGCGATTCCAATCAT GTAGATACGATCAGGAACTTGCTTAACTTTGTACTGGATTTGCCTGATGTGAAGTCTGTTCCTAGAAGGTTCGATTTGCATTTCGTGAATCCGAAGGATT CGTCCCAGTCGGTTAGGATCACTAGCATTTTCAATGGTCATTGGAATGAGACGCAGAACTACCAAGGTCTGAATTCGTTGAAAAACGAAGGGTTTAGGGA TCTTGTGAAGAAGTTCTTCACAGAGGAAGGAACTGTTCCCGACACTGTAATCCTAAACTCCGGCCTGCACGATGGGATTTACTGGCCGAACATCAGACGA TTCGCAGGGGGAGCTGATTACGCAGCCGAGTTCTGGAAGGAGGTTATGGATTCGGTGAAACGAAGAGGATTGGTACCTCCGAGGATCATTTACAGGACGA CTGTTGCCACAGGCGGAGATGCGAGGACAATGGCGTTCAATCCGAGTAAGATGGAGGCGTTCAATTGGGTGGTGTTGGACAAGTTCAGGAGAGCCGGACT GCTCTCGGGGGTGATCGACAACTTCGACATGACGTTTCCTTGGCATTTCAACAACAGATGCAACGACGGGGTGCATTACGGGAGAGCTCCGTTGAAGATG AAGTGGAAGGACGGTGAGATCGGGCACCAGTACTTTGTTGACCTGATGCTGGCTCATGTGCTGCTCAATGTGCTGTGTGTTAAGTAA
AA sequence Show only first row Show all	>Lus10034027 pacid=23154788 polypeptide=Lus10034027 locus=Lus10034027.g ID=Lus10034027.BGIv1.0 annot-version=v1.0 MPEKGTNSPRSKLSHLPWLFRPSPLHQWRLHFLTALVFLGMVLVWSLDGCTIKSVVQSLRSDPHRHQLLTVKFRPQPTNLAQENTQPNFTNGTAVIFSAD APTPLPLPRDDVSAGIANGKSASSYPDDELLQMPTRMKEDSAAAGDAKWATAELEPNFTSGLLSRWLAPGGEPCMDERTADVSFPDFDGKEGTGTTVELT AGDSHEFVFRAVDESRNPRCSGGDYFESDLSGESWKSRPLVKDFGNGSYSISLQIHPDFAGDYDLTLILLYRHFEGLKFSPKRFVFSKELRKLRIRFVKT HTQLPELKFCSGADFDRNLWVGRWTRHGKNDDCQISRDGRDRCLPADFPCRNPWCNGSLGSLESNGWVYSSHCSFKLFQPDSAWNCLKNRWIFFWGDSNH VDTIRNLLNFVLDLPDVKSVPRRFDLHFVNPKDSSQSVRITSIFNGHWNETQNYQGLNSLKNEGFRDLVKKFFTEEGTVPDTVILNSGLHDGIYWPNIRR FAGGADYAAEFWKEVMDSVKRRGLVPPRIIYRTTVATGGDARTMAFNPSKMEAFNWVVLDKFRRAGLLSGVIDNFDMTFPWHFNNRCNDGVHYGRAPLKM KWKDGEIGHQYFVDLMLAHVLLNVLCVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06150			unknown protein		Lus10034027 [exp]	0	1
AT4G28230			unknown protein		Lus10033724 [exp]	1.0	0.9025
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	1.7	0.8697
AT3G57400			unknown protein		Lus10042066 [exp]	2.0	0.8689
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	6.3	0.8688
AT2G22900			Galactosyl transferase GMA12/M...		Lus10011550 [exp]	7.3	0.8635
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	7.5	0.8721
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	11.2	0.8512
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10022889 [exp]	12.2	0.8221
AT2G34510			Protein of unknown function, D...		Lus10023314 [exp]	12.7	0.8229
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	13.3	0.8468

Compare expression of checked genes

Lus10034027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.