Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19070 307 / 5e-105 SNARE associated Golgi protein family (.1) AT1G03260 298 / 2e-101 SNARE associated Golgi protein family (.1) AT1G22850 83 / 5e-18 SNARE associated Golgi protein family (.1) AT2G02370 62 / 1e-10 SNARE associated Golgi protein family (.1.2) AT4G09580 52 / 2e-07 SNARE associated Golgi protein family (.1) AT1G71940 50 / 9e-07 SNARE associated Golgi protein family (.1.2) AT4G17790 42 / 0.0003 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004421 [exp] 451 / 1e-161 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 324 / 9e-112 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 258 / 2e-85 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10012371 [exp] 224 / 1e-72 AT1G03260 274 / 1e-92 SNARE associated Golgi protein family (.1) Lus10041229 [exp] 151 / 9e-41 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10006162 [exp] 80 / 9e-17 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 79 / 1e-16 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10017913 [exp] 48 / 4e-06 AT4G09580 442 / 2e-158 SNARE associated Golgi protein family (.1) Lus10008915 [exp] 47 / 1e-05 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202600 [exp] 355 / 3e-124 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 343 / 3e-119 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 87 / 2e-19 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 86 / 3e-19 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.003G151800 [exp] 52 / 1e-07 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.001G078700 [exp] 52 / 2e-07 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.001G140200 [exp] 51 / 2e-07 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) Potri.019G083500 [exp] 50 / 8e-07 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2) Potri.003G094000 [exp] 49 / 8e-07 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1) Potri.013G113000 [exp] 49 / 2e-06 AT4G09580 454 / 5e-163 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10034028 pacid=23154770 polypeptide=Lus10034028 locus=Lus10034028.g ID=Lus10034028.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTCTCCTGGGCCTCTGCTCTCAGGATCACTGTCATCCTCCTCCTCCTCGCCGCTGCCGTTTTCGCCTGCTTCACTCTTCCCGTTGAAAAGG ATGCACTGGTTTCTCCTTTCGTTGACCAAAGAGCTGTTTCATTGCAGATACTGAAGGACTTCTTACTATGGGTTGAGCAGGATCTTGGACCTTGGGGTCC GCTTGTGCTTGCTGTGGCATATATACCCTTGACGATCTTGGCAGTTCCAGCATCAGTGCTTACTCTTGGCGGTGGATATCTTTTCGGATTGCCTATTGGC TTTGTTGCTGATTCTATTGGTGCAACTGTTGGTGCAGGGGCTGCATTCCTTCTTGGTAGAACTCTTGGTAGATCTATAGTCGTTTCCAAGTTGAAGGACT ATCCGCAGTTCAGATCCGTGGCTATTGCTATTCAAAGATCTGGATTCAAGATTGTTCTTTTGCTTCGACTTGTTCCATTGCTCCCTTTTAACATGTTGAA TTATCTTCTGTCTGTCACTCCCGTCCCTTTCCCTCAGTACATGCTGGCTTCCTGGTTAGGAATGATGCCAATAACCTTTGCATTAGTTTACGTTGGAACG ACTCTCAAGGATCTTTCTGATGTTACACATGGCTGGAGTGAGTTTTCAACTACTCGTTGGGTGATGATTGTCTTAAGCCTTGTTGTTTCCGCTGTTCTAA TAGTCACGGTTACTAAAGTTGCTAAGTCAGCTCTCGACAAAGCTTTGGCTGAAACCGATGAGATGGATGGATTAATGTCGATCTCACCAGAGTTGCCAGC AGTGGCCGATCCGTCTAGCGATCTGAACCAGCCTCTGATAATCAAGATAGACTTGGAAGATAACGACAACGTACGAAACTAA
AA sequence Show only first row Show all	>Lus10034028 pacid=23154770 polypeptide=Lus10034028 locus=Lus10034028.g ID=Lus10034028.BGIv1.0 annot-version=v1.0 MASFSWASALRITVILLLLAAAVFACFTLPVEKDALVSPFVDQRAVSLQILKDFLLWVEQDLGPWGPLVLAVAYIPLTILAVPASVLTLGGGYLFGLPIG FVADSIGATVGAGAAFLLGRTLGRSIVVSKLKDYPQFRSVAIAIQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPFPQYMLASWLGMMPITFALVYVGT TLKDLSDVTHGWSEFSTTRWVMIVLSLVVSAVLIVTVTKVAKSALDKALAETDEMDGLMSISPELPAVADPSSDLNQPLIIKIDLEDNDNVRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	0	1
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	1.4	0.8896
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	2.0	0.8627
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	2.8	0.8526
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	3.0	0.8616
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	3.2	0.8519
AT5G23850			Arabidopsis thaliana protein o...		Lus10008017 [exp]	3.7	0.8228
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10001682 [exp]	9.8	0.8453
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10014408 [exp]	10.2	0.7816
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	11.5	0.7837
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	14.1	0.7670

Compare expression of checked genes

Lus10034028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.