Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06145 147 / 1e-45 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004420 [exp] 287 / 8e-101 AT3G06145 148 / 4e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G030701 [exp] 0 / 1 AT3G06145 0 / 1 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034029 pacid=23154881 polypeptide=Lus10034029 locus=Lus10034029.g ID=Lus10034029.BGIv1.0 annot-version=v1.0 ATGCATTTTGCTCCAAAGCTGAAACTCCCAAAACACTTGCTTTCTTCCTTCAGGGGACTCTGCATATTCCCCCTGCTAAGAGGGTGCCTCTTTGATGGAT GTAGAGATCACACACAAGCATCAGGATTCGGAACCAGGGTGTGGAACCTGAGTGACAGGCCGGTCGAGCTTCAGGTTAGAGTTGGGTCGATTCTCAAGAA GGTACACACTTTGAAGCCAGGGTTTTCCAAGAGGCTCAAGTGCAAGAGCATATACAAGGCCTATATGCCCGGTGGTCGAGGCACCGGAGGGACCACGAGG AATATGCTGTATTACTATGATGAGACGTGCCAGCCGTACATATGGGTTCACGATACGGGTGGGGAGTTGTCGAGGATGGTGAAGCAGCAGTACTTGAGCT TGGATGATTTGAGGGAATCTTGTGAAATCAAGATACTTTGGGATCATCAACGTGGATGCATTACTGTTAAGAAGAAGCCTAGGCCTGATTTCTGCTGA
AA sequence Show only first row Show all	>Lus10034029 pacid=23154881 polypeptide=Lus10034029 locus=Lus10034029.g ID=Lus10034029.BGIv1.0 annot-version=v1.0 MHFAPKLKLPKHLLSSFRGLCIFPLLRGCLFDGCRDHTQASGFGTRVWNLSDRPVELQVRVGSILKKVHTLKPGFSKRLKCKSIYKAYMPGGRGTGGTTR NMLYYYDETCQPYIWVHDTGGELSRMVKQQYLSLDDLRESCEIKILWDHQRGCITVKKKPRPDFC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06145			unknown protein		Lus10034029 [exp]	0	1
AT3G06145			unknown protein		Lus10004420 [exp]	1.4	0.8816
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	2.0	0.8705
					Lus10043163 [exp]	5.7	0.8029
AT1G61667			Protein of unknown function, D...		Lus10018396 [exp]	6.9	0.8628
					Lus10003135 [exp]	9.4	0.8446
AT1G11440			unknown protein		Lus10018397 [exp]	12.3	0.7767
AT1G61667			Protein of unknown function, D...		Lus10007617 [exp]	12.4	0.7813
AT4G13950		RALFL31	ralf-like 31 (.1)		Lus10016646 [exp]	14.7	0.8072
AT3G25130			unknown protein		Lus10022768 [exp]	17.1	0.8045
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001748 [exp]	18.3	0.7838

Compare expression of checked genes

Lus10034029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.