Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06140 342 / 5e-116 RING/U-box superfamily protein (.1) AT5G19080 315 / 3e-105 RING/U-box superfamily protein (.1) AT3G09770 270 / 3e-87 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 244 / 1e-78 RING/U-box superfamily protein (.1) AT5G03200 224 / 2e-70 RING/U-box superfamily protein (.1) AT5G04460 53 / 2e-07 RING/U-box superfamily protein (.1.2.3) AT1G59560 50 / 1e-06 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT3G23280 50 / 2e-06 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT1G68820 50 / 2e-06 Transmembrane Fragile-X-F-associated protein (.1) AT4G24204 45 / 5e-06 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004419 [exp] 623 / 0 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10023182 [exp] 269 / 2e-88 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10015080 [exp] 269 / 5e-87 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 254 / 6e-82 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 251 / 1e-80 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10038656 [exp] 53 / 3e-07 AT5G04460 930 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10037928 [exp] 52 / 5e-07 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 51 / 1e-06 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10027994 [exp] 50 / 1e-06 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G030600 [exp] 407 / 6e-141 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 395 / 1e-136 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 339 / 5e-114 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 321 / 9e-107 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.006G128700 [exp] 282 / 2e-92 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.016G089000 [exp] 220 / 2e-68 AT3G09770 301 / 1e-100 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.001G074800 [exp] 58 / 1e-08 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.003G156400 [exp] 56 / 4e-08 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.003G065500 [exp] 52 / 4e-07 AT1G54150 341 / 3e-115 E3 Ubiquitin ligase family protein (.1) Potri.005G225300 [exp] 52 / 4e-07 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034030 pacid=23154766 polypeptide=Lus10034030 locus=Lus10034030.g ID=Lus10034030.BGIv1.0 annot-version=v1.0 ATGGGGATTTCATGGAGTAGCAGCAGAAGAAGGCAAAACCACGCTTTTTACCACCAACAACAACATCCACCTCACCTTCCTCCTCCTCCACCACCTCACT ACTTCTCCACCGAACAAACTCTTCTCCCTCCTCCTCCACCGCCGCCGAACCCGATCCAAGGCTACTATGCCGCCGCTCCCACAACCACCGTAGCATCACC TTCCACAACCACCCCGCAGCCATCTTACGCAGCTCCTCCTCCTCCTCCACAACCGCCGACTCACTCCTACTACAGCTCCCATCCTTACAATTCTCGCGGC TACTCGAATCAGTTGGCCGGAAGATTCAATTACCAGCCCTATTATTACGGCAATTCGTCCGGCGGATGGCCTGCCCCTCCTCATGCGGTCAGACCTAATG CTGGTCCTTCGGTTCAGCCCGTGCCTTACGTAGAGCACCAGAATGCTAAGAAGGTTAGGAATGAAGTTAACGTTCATAAGGATACTTTGAGGCTTGAGTT GGATGAGAATAACCCGGATCACCACTTGCTCTCTTTCGTTTTTGACGCACTTGTTGATGGAAGCATTAGCATTTCCTACTTTGCAAAGGAAGAGCCAAAC TGTAAGTTCGTTCCAGCATATCCTGATGTTCATATGCCAGTCAGGGTTCCATTTCAGAAAGGTGTTGCTCAGAAATTCCTTCAACCATCAGGAACGGGCA TTGACTTGGGTTTCTTTGAGTTGGATGATCTCTCAAAACCATCATTCGATGAAGATGTTTTCCCACTTGTTATAGTTGCGGAAACATGTCCACCTGTAAA TTCAACCGGTGAACTTGACGATTCTCTATCAGGACCAGGTTCACCTGGTAATATGCAGATTACACAAGCTGTTTTAGAGAAGAAAGATTGCGGACCTTTT TCTGTGAAAGTGATAAAGCAGATACTGTGGATTGAAGGAGTCAGGTATGAACTTCGTGAGATTTATGGGATGCGAAGTTCCGCAGCTGAAGATTTCGATG ATACCGAACCTGGGAAAGAATGCGTTATTTGCATGACTGAACCCAAGGATACTGCCGTGTTGCCCTGCCGACATATGTGCATGTGCAGCGAATGTGCGAA GGAATTGAGGATACAATCCAACAAGTGCCCCATATGCCGCCAACCAATTGAAGAACTTATAGAGATCAAGGTTAAGAGTGGCGGGGACCAATAG
AA sequence Show only first row Show all	>Lus10034030 pacid=23154766 polypeptide=Lus10034030 locus=Lus10034030.g ID=Lus10034030.BGIv1.0 annot-version=v1.0 MGISWSSSRRRQNHAFYHQQQHPPHLPPPPPPHYFSTEQTLLPPPPPPPNPIQGYYAAAPTTTVASPSTTTPQPSYAAPPPPPQPPTHSYYSSHPYNSRG YSNQLAGRFNYQPYYYGNSSGGWPAPPHAVRPNAGPSVQPVPYVEHQNAKKVRNEVNVHKDTLRLELDENNPDHHLLSFVFDALVDGSISISYFAKEEPN CKFVPAYPDVHMPVRVPFQKGVAQKFLQPSGTGIDLGFFELDDLSKPSFDEDVFPLVIVAETCPPVNSTGELDDSLSGPGSPGNMQITQAVLEKKDCGPF SVKVIKQILWIEGVRYELREIYGMRSSAAEDFDDTEPGKECVICMTEPKDTAVLPCRHMCMCSECAKELRIQSNKCPICRQPIEELIEIKVKSGGDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19080			RING/U-box superfamily protein...		Lus10034030 [exp]	0	1
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10018222 [exp]	4.5	0.7642
AT5G42000			ORMDL family protein (.1.2)		Lus10003209 [exp]	4.9	0.7756
AT5G02420			unknown protein		Lus10038653 [exp]	5.7	0.7586
AT2G37035			unknown protein		Lus10026520 [exp]	6.3	0.7886
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	7.9	0.7983
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	8.8	0.7982
AT3G12630		SAP5	stress associated protein 5, A...		Lus10037702 [exp]	10.5	0.7935
AT3G02720			Class I glutamine amidotransfe...		Lus10010964 [exp]	11.5	0.7908
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	13.5	0.7470
AT1G10140			Uncharacterised conserved prot...		Lus10018665 [exp]	20.0	0.7360

Compare expression of checked genes

Lus10034030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.