Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06120 210 / 7e-69 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 116 / 7e-31 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 112 / 1e-29 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 112 / 7e-29 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 100 / 1e-24 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 98 / 3e-24 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G24140 96 / 9e-23 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 92 / 6e-22 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 90 / 4e-21 bHLH bHLH071 beta HLH protein 71 (.1) AT5G65320 70 / 5e-14 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010503 [exp] 265 / 1e-89 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 137 / 9e-38 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 135 / 4e-37 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 116 / 3e-32 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 112 / 8e-31 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 103 / 8e-26 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014938 [exp] 97 / 6e-24 AT5G53210 264 / 2e-87 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039328 [exp] 96 / 4e-23 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001066 [exp] 95 / 2e-22 AT5G53210 268 / 9e-88 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202900 [exp] 232 / 2e-77 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 144 / 5e-41 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 136 / 1e-37 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 120 / 2e-32 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 119 / 3e-32 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.005G039800 [exp] 120 / 4e-32 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 117 / 6e-31 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 114 / 3e-30 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 114 / 2e-29 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 108 / 5e-28 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034031 pacid=23154668 polypeptide=Lus10034031 locus=Lus10034031.g ID=Lus10034031.BGIv1.0 annot-version=v1.0 ATGTCCCACATAGCGGTAGAGAGGAATCGGAGGAGGCAGATGAATGAGAATCTCACAGTCTTGCGATCTCTAACCCCTCGCATCTACATCAAAAGGGGGG ACCAAGCATCGATCATAGGGGGAGTGATAGAGTTCATAAAAGAGCTGCACCACCTACTTCAAGCACTGGAGTCCAAGAAGCAAAGGCGATTGAGTCTGAG CCCTAGCAGTGCTAGTAGCCCTAGCCCACGTCGTCATATGTTGCAGCTCATGCCACCTACTGCAGCTACTTGCGATCATCATATTAATAACAACATGAAT GTAAAGAATGAGGAGTCATCGGAGTCGTTGTCGTCGTCGTCGCAGCAGCAGCAGCAGCAGCTGGGGGCATGTTGCAACTCCCCGGTTGCTGACGTGGAAG CAAAGCTAACAGGATCCAATGTGGAGTTGAAGGTGATATCGAGCCGGGTAAAGGGTCAGGTTGTGAAGATGATAAGTGTGCTGGAGATGCTGTCGTTCGA GGTACTCCATCTCAACATCAGTAGCATGGATGATACTGTCCTCTACTCCTTTCTCCTTAAGATAGGGTTGGAATGTAGGGTAAGCATGGAGGAACTTGCA CTTGAAGTCCAACGTACTTTCTTCTCGACATCTACAGCTCCTGCTCCTGCTCTTGCTAGTAATGCTACTGATATTCATCGTCATCACCATACGAATCATG AGCTGCTTTGTTTGTAG
AA sequence Show only first row Show all	>Lus10034031 pacid=23154668 polypeptide=Lus10034031 locus=Lus10034031.g ID=Lus10034031.BGIv1.0 annot-version=v1.0 MSHIAVERNRRRQMNENLTVLRSLTPRIYIKRGDQASIIGGVIEFIKELHHLLQALESKKQRRLSLSPSSASSPSPRRHMLQLMPPTAATCDHHINNNMN VKNEESSESLSSSSQQQQQQLGACCNSPVADVEAKLTGSNVELKVISSRVKGQVVKMISVLEMLSFEVLHLNISSMDDTVLYSFLLKIGLECRVSMEELA LEVQRTFFSTSTAPAPALASNATDIHRHHHTNHELLCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10034031 [exp]	0	1
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10038158 [exp]	1.0	0.9669
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10042829 [exp]	2.0	0.9505
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10024960 [exp]	4.2	0.9183
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10035720 [exp]	9.4	0.9469
AT1G64820			MATE efflux family protein (.1...		Lus10028504 [exp]	9.5	0.9064
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10037307 [exp]	9.5	0.9470
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10039094 [exp]	12.5	0.8818
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10037891 [exp]	13.8	0.9298
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	14.0	0.9271
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Lus10002497 [exp]	16.8	0.9296

Compare expression of checked genes

Lus10034031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.