Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 343 / 1e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 342 / 5e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 338 / 2e-113 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 329 / 5e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G59540 329 / 9e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06645 326 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43450 319 / 5e-106 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 318 / 8e-106 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 317 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 317 / 3e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022195 [exp] 412 / 3e-142 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 411 / 6e-142 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 411 / 9e-142 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 398 / 8e-137 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 394 / 3e-135 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 392 / 3e-134 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022197 [exp] 391 / 4e-134 AT1G06620 434 / 6e-153 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 391 / 4e-134 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 386 / 3e-132 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073166 [exp] 387 / 1e-132 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 363 / 4e-123 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 360 / 6e-122 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 343 / 3e-115 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G156200 [exp] 336 / 1e-112 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 336 / 2e-112 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 296 / 3e-97 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 285 / 2e-92 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 284 / 3e-92 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 278 / 7e-90 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10034032 pacid=23154734 polypeptide=Lus10034032 locus=Lus10034032.g ID=Lus10034032.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCAACGACGCAGCAAGAATCCGGTTACGACCGGCTCACGGAGCTTAAAGCTTTCGACGAAACAAAAGCCGGAGTGAAAGGACTAGTTGACG CCGGAATCAAAAACCTCCCCCGCATCTTCCGCGCCCCACCCCATCTCCTCGACGACAGACCCACCGTCCCCGCCGGCGATCCAAATTTCATTTTCCCCAT CATAGACCTGCAAGGGAAACGAAACCAGGTCATCGACCAAATCAGGGAAGCATCGGCAGATTGGGGATTTTTCCTAGTGAAGAACCACGGAATTAGCGGG ACAGTGCTGGATGAGATGATAGCTGGCTGCCGGACATTTCATGAGCTGGAGGCTGACCAGAAGAAGGAATACTTCGGACGTGGAGCTGAAAAGAAGTTCG TCTATAATAGCAACTTCGATCTGTACAGTGGAACCGTTGCCAATTGGAGGGATTCCACAGTTTGTCAGGTTGCTCCAAATCCAGCTCAGCTTCACGAGTT GCCGCCATGCTACAGGGGAAGTCTAACAGAGTATTCTGACCAAGTGTTGAAACTAGGAGGGTTACTTCTCCGATTTCTGTCGGAAGCTTTAGGTTTGGCT CCGAATTATTTGGAAGAGATGGATTGTGGAAGGGGATTGACTGTGGGATGTCATTACTATCCACCTTGTCCTCAACCGGAGCTGGCCGTCGGGACTACCA AGCATACTGATTTCGACTTCTTTACCATTGTCTTGCAAGATCATATCGGCGGTCTTCAGGTTCTTCGTCAGAATCATTGGGTGGATGTGCCTTCCATCCC GGAAAGTCTAGTGGTGAACATTGGAGATTTACTTCAGCTGATATCGAATGACAGATTTGTAAGCGTGGAGCATAGAGTGATAACGAACAGAGTTGAATCA AGAGCATCGGTGGCGGCTTTTTTCAACGGAGACATTTCGGACGCTTCAAGAAAGTATGGGCCCATTAAGAAACTATTATCGTACGAAAGCCCGGCCCGAT ATGGAGAGACAACATGTGCGGAGTTCAGTGCCCTCTCCTACAAGAAAGGCCTTGATGGGGTCTCTACATTGGCGCATTTTAGACGGGTTTCTTCTTCCAG AGCAAGGCATCGCGTAGTATCTCAGCACGATACGAAGGCGGGGAAGATGGCAGAGACGATGGAAACAAGGATGAAAGCGTTAACGTTAGCGGAGTTGGAG GCACAAGTAGAGGAGATTGAGGGGATGGAGCTTACAACTCCGATAATGGAGGATGTCAAGCTGTGTGTAGACGGAGAATTTCTCACAGAACGAGCCTTCA ATTACGAGGTAATCAAGACCATGATAGCAGAGATTTGGCGCCCGAAGAAGGGTATGGTAGGTCGAGACCTGTGA
AA sequence Show only first row Show all	>Lus10034032 pacid=23154734 polypeptide=Lus10034032 locus=Lus10034032.g ID=Lus10034032.BGIv1.0 annot-version=v1.0 MAAATTQQESGYDRLTELKAFDETKAGVKGLVDAGIKNLPRIFRAPPHLLDDRPTVPAGDPNFIFPIIDLQGKRNQVIDQIREASADWGFFLVKNHGISG TVLDEMIAGCRTFHELEADQKKEYFGRGAEKKFVYNSNFDLYSGTVANWRDSTVCQVAPNPAQLHELPPCYRGSLTEYSDQVLKLGGLLLRFLSEALGLA PNYLEEMDCGRGLTVGCHYYPPCPQPELAVGTTKHTDFDFFTIVLQDHIGGLQVLRQNHWVDVPSIPESLVVNIGDLLQLISNDRFVSVEHRVITNRVES RASVAAFFNGDISDASRKYGPIKKLLSYESPARYGETTCAEFSALSYKKGLDGVSTLAHFRRVSSSRARHRVVSQHDTKAGKMAETMETRMKALTLAELE AQVEEIEGMELTTPIMEDVKLCVDGEFLTERAFNYEVIKTMIAEIWRPKKGMVGRDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10034032 [exp]	0	1
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	3.9	0.9584
AT3G05390			unknown protein		Lus10029907 [exp]	4.0	0.9630
AT5G56040			Leucine-rich receptor-like pro...		Lus10018094 [exp]	4.5	0.9526
AT2G24400			SAUR-like auxin-responsive pro...		Lus10037302 [exp]	4.8	0.9360
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	5.8	0.9591
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10001282 [exp]	6.3	0.9486
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	7.3	0.9480
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	8.8	0.9446
AT4G33590			unknown protein		Lus10041131 [exp]	9.5	0.9517
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	10.1	0.9516

Compare expression of checked genes

Lus10034032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.