Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 244 / 3e-76 Eukaryotic aspartyl protease family protein (.1) AT1G03230 233 / 1e-71 Eukaryotic aspartyl protease family protein (.1) AT5G19110 159 / 6e-44 Eukaryotic aspartyl protease family protein (.1) AT5G48430 145 / 4e-39 Eukaryotic aspartyl protease family protein (.1) AT5G19100 129 / 3e-33 Eukaryotic aspartyl protease family protein (.1) AT5G19120 127 / 2e-32 Eukaryotic aspartyl protease family protein (.1) AT3G25700 82 / 2e-16 Eukaryotic aspartyl protease family protein (.1.2) AT3G59080 68 / 4e-12 Eukaryotic aspartyl protease family protein (.1.2) AT1G64830 62 / 2e-10 Eukaryotic aspartyl protease family protein (.1) AT2G42980 62 / 4e-10 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034036 [exp] 370 / 1e-124 AT1G03220 316 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 272 / 1e-86 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 268 / 3e-85 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 256 / 6e-81 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 257 / 1e-80 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 213 / 3e-64 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 197 / 1e-58 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 139 / 1e-36 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10021939 [exp] 137 / 4e-36 AT5G19120 228 / 4e-71 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203200 [exp] 270 / 4e-86 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 260 / 2e-82 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 250 / 2e-78 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.008G203100 [exp] 190 / 2e-55 AT1G03220 280 / 3e-90 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 187 / 4e-54 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 182 / 2e-52 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 180 / 2e-51 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 173 / 6e-49 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 171 / 5e-48 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 166 / 3e-46 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034035 pacid=23154819 polypeptide=Lus10034035 locus=Lus10034035.g ID=Lus10034035.BGIv1.0 annot-version=v1.0 ATGGCTTCGTTTTCTGGTTTGAAATCAATAGCTTCACTTAAGCAACTATTCTTCCTCGTTTTCCTTTCCCACTTGGCATTATCTTCCATCACCCAAGCCC AACAACAACAACCCAAGCCCAAATCACTAATCCTCCCACTCTCCCAATACCGTGCCACACGCCAAATACTAACCCACCTCCAAATCGGGACCCCTCCGGT CACCAAAACCCTCATCCTCGACCTCGCCGCCGATATCTCCTGTCTCCATTGCTACAGCGGCTACTCCACTTCCTCCTCCACCCACCGCCTCGCAAGCTGC GGATCCTCCGCCTGCTCCCTCTCCTCCGCCGACTGCTCCGGAAGTCATAACAACACTTGCCGCCTTCTCACTCATAACCCTTTCGAAACCACCACCACCT GGTCCGATGTCGCACTCGACACTGTCTCGATCCGCGCATCCGTCGCCGGCGCCAGGGCCGGCAAACACGTCTCCATCCCCAATTTCATCTTCGCCTGCAA CAATTTCTACAACCTGGACAAATTCCCCACCGGCGTCGTCGGCTCGATCGGGCTCGCCAGAGGCCGCGTCTCTGCCCTGTCCCAGATCTCCTCTGCTGGA AACCTAGCCAGGAAATTCGCAATTTGCTTACCGTCTGCTCCGAATTCCAACGGCATCATGTTCTTCGGCGACTCCCCTTACGTTTTCTACCCTTCCGACA ACGTTTCCCGATCAATCGACGTTTCCTACAGACTAATTTACACGAAGCTCCACACTAATTCCCGTCCCGTTTCAGGATCCGAAATTCCCGACTACTTGGT CAAAATTACCTCGATTCTGGTCAACGGGTCGCCCGTACGGATCAACTCGACGCTTCTGGAGTTTCACCCGGGCGGAACGGGAGGGGCGAAGGTGAGCACG ACGCGCCCGTACACGGTTCTGGAGAGCTCAATCTACAGTTCCGTTGTCCGGGCTTTCGACAAGGAGGTGATGAAGACGCCTAGGGTGAAGAAGGCGGCAG CGGTGGCGCCATTCCGCGACTGCTACGAGAAAGGGGATCTGCATATGAGTCTGAGCGGGATTTCCGTGCCGGATATTGCACTAATATTCGAGAACGGGGA CGTGAAGTGGGACATTTACGGGGTGAATTCGATGGTCGAGGTGAGTGAGAATGTGATTTGTCTAGGTTTTATGGACGGAGGGCCGGCGACGGCGAAAGGA GCTTATGTGGCGGCGGTGATCGGAGCGTATCAGATGCAAGGGGTGTTGGTTGAGTTTGATTTGGGTTTAGGGAGGCTTGGGTTTACTAATACTCTTCTGG CTGAGTCTGTGGAGTGTTCCAACTTCCATTTCTAG
AA sequence Show only first row Show all	>Lus10034035 pacid=23154819 polypeptide=Lus10034035 locus=Lus10034035.g ID=Lus10034035.BGIv1.0 annot-version=v1.0 MASFSGLKSIASLKQLFFLVFLSHLALSSITQAQQQQPKPKSLILPLSQYRATRQILTHLQIGTPPVTKTLILDLAADISCLHCYSGYSTSSSTHRLASC GSSACSLSSADCSGSHNNTCRLLTHNPFETTTTWSDVALDTVSIRASVAGARAGKHVSIPNFIFACNNFYNLDKFPTGVVGSIGLARGRVSALSQISSAG NLARKFAICLPSAPNSNGIMFFGDSPYVFYPSDNVSRSIDVSYRLIYTKLHTNSRPVSGSEIPDYLVKITSILVNGSPVRINSTLLEFHPGGTGGAKVST TRPYTVLESSIYSSVVRAFDKEVMKTPRVKKAAAVAPFRDCYEKGDLHMSLSGISVPDIALIFENGDVKWDIYGVNSMVEVSENVICLGFMDGGPATAKG AYVAAVIGAYQMQGVLVEFDLGLGRLGFTNTLLAESVECSNFHF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034035 [exp]	0	1
AT5G62360			Plant invertase/pectin methyle...		Lus10031138 [exp]	1.4	0.9754
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	1.4	0.9717
AT2G24800			Peroxidase superfamily protein...		Lus10020097 [exp]	2.2	0.9556
AT1G60060			Serine/threonine-protein kinas...		Lus10018736 [exp]	3.0	0.9699
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	3.5	0.9578
AT1G68260			Thioesterase superfamily prote...		Lus10031948 [exp]	4.9	0.9414
AT5G54010			UDP-Glycosyltransferase superf...		Lus10013337 [exp]	4.9	0.9480
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	6.7	0.9325
AT1G19400			Erythronate-4-phosphate dehydr...		Lus10042323 [exp]	7.1	0.9112
AT3G09870			SAUR-like auxin-responsive pro...		Lus10013819 [exp]	8.9	0.9198

Compare expression of checked genes

Lus10034035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.