Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 307 / 3e-100 Eukaryotic aspartyl protease family protein (.1) AT1G03230 304 / 3e-99 Eukaryotic aspartyl protease family protein (.1) AT5G19110 142 / 8e-38 Eukaryotic aspartyl protease family protein (.1) AT5G48430 137 / 9e-36 Eukaryotic aspartyl protease family protein (.1) AT5G19100 128 / 9e-33 Eukaryotic aspartyl protease family protein (.1) AT5G19120 116 / 1e-28 Eukaryotic aspartyl protease family protein (.1) AT2G39710 76 / 1e-14 Eukaryotic aspartyl protease family protein (.1) AT1G09750 74 / 4e-14 Eukaryotic aspartyl protease family protein (.1) AT2G42980 72 / 2e-13 Eukaryotic aspartyl protease family protein (.1) AT3G52500 67 / 7e-12 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034035 [exp] 381 / 4e-129 AT1G03220 260 / 2e-82 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 301 / 1e-97 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 301 / 2e-97 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 300 / 3e-97 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 296 / 3e-96 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 251 / 2e-78 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 229 / 1e-70 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 211 / 4e-64 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 180 / 8e-52 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054900 [exp] 314 / 4e-103 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G203200 [exp] 307 / 2e-100 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 280 / 5e-90 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.005G095600 [exp] 237 / 5e-73 AT1G03220 322 / 3e-106 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 219 / 2e-66 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 219 / 4e-66 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 218 / 8e-66 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 209 / 1e-62 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 206 / 4e-61 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 206 / 5e-61 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034036 pacid=23154759 polypeptide=Lus10034036 locus=Lus10034036.g ID=Lus10034036.BGIv1.0 annot-version=v1.0 ATGGCGTCTACACTTCCTCATTCCTCCTCCATTCTCCTTACTCTCATTTTCTCCACACTACTACTCATCATCTCAGTCAACGCCCAAACCAGCTCAAGCC CCAAACAGCTAATCCTCCCCATCACCAAAGACCGCTCCACTCTCCAAATCCTAACCCGTTTCGACTTCGGCACTCCACCGGTCACCAGAACCTTCATGCT CGACCTCTTCGCCAAACAGCTCTGGCTCGACTGCTACACCGGCTACTCCAATTCCTCCTCCACTTACCGACTCGCCCGCTGCGGCTCCGCCGCTTGCTCC GTCGCCAACGCCGACTGCCCCAGCCCCTGTCTCATCCCTCCCCGACCCGGTTGCAACAACAACACCTGCGTCGTCCTAACTGAAAATCCCATCCGGACAA CCATGGGCATAGCAGAGCTCTCCCTCGATACGGTGTCGTTCCTCTCCACCCCCACGAGCGGCTCACGTGCTTCGTCCTTCTCCCCTGTTTCAATCCCTAA TTTCATCTTCGGCTGTATTGATTCTTTCCTGGACGAATTTGCACCCGGCGTCCAGGGAGTTTTCGGCCTCGCCAGAGACCGTGTCTCCCTCCCCGTACAC GTTGCCCCCGTCCGTCCGAGGCCCTCTACCGCGTTCGGCGGTAGCCTCCGCCGCGAATTCGCTCTATGTATCCCTTCCTCGTCCGACGCCGAAGGCGTCC TGTTCTTTGGTGAATCGCCTTACGTGTTCCAAGGGAACGACATCTCGTCCAGATTCAAGTACACCAGATTGGTGAAGAATTACGAGAGGACTGCATCGCC AAATGTTCAAGGAGCCGAGATTCCGGCTTACTTCGTCAAAATCACCTCGATTCTGGTGGAGAACTCTCCGATCCCGATCAATTCGTCGCTGCTGGAGTTT AGGCGGACGGGGATCGGGGGGACCATGATTAAGACGACGCATCCGTACACGATACTGGAGACGACGATATACAGGTCGCTGGTGAGGGCGTTCGAGGGAA GCGAGTTGATTAAGAAGTCGAATGTGAGGAAGGTTGCGGCGGTGGCGCCTTTGACGGACTGTTACACGAAAGGGAATCTGGCGAGGACGAGGTTCGGGAT CGAGGTGCCGAAGATATCGCTGGTGTTCGAGAACCGGGAAGTGAAGTGGGATATTCTGGGGGAGAACTCGATGGTGGATGTGAGTAAGGACGTGATGTGC TTGGGGTTTATGGACGGAGCAAATACGGCGGTAGACGGAGGGACGCAGACGACGGCGTCGATCGTGATAGGGGCGCTTCAGATGCAGGATAATTTGGTGC ACTTCGATCTGCAGTCGTCGAGGATGGGATTCAGTAACACAATGTTGGTTGATGGTGTCCGTTGCTCATCTTTCTATATGTAA
AA sequence Show only first row Show all	>Lus10034036 pacid=23154759 polypeptide=Lus10034036 locus=Lus10034036.g ID=Lus10034036.BGIv1.0 annot-version=v1.0 MASTLPHSSSILLTLIFSTLLLIISVNAQTSSSPKQLILPITKDRSTLQILTRFDFGTPPVTRTFMLDLFAKQLWLDCYTGYSNSSSTYRLARCGSAACS VANADCPSPCLIPPRPGCNNNTCVVLTENPIRTTMGIAELSLDTVSFLSTPTSGSRASSFSPVSIPNFIFGCIDSFLDEFAPGVQGVFGLARDRVSLPVH VAPVRPRPSTAFGGSLRREFALCIPSSSDAEGVLFFGESPYVFQGNDISSRFKYTRLVKNYERTASPNVQGAEIPAYFVKITSILVENSPIPINSSLLEF RRTGIGGTMIKTTHPYTILETTIYRSLVRAFEGSELIKKSNVRKVAAVAPLTDCYTKGNLARTRFGIEVPKISLVFENREVKWDILGENSMVDVSKDVMC LGFMDGANTAVDGGTQTTASIVIGALQMQDNLVHFDLQSSRMGFSNTMLVDGVRCSSFYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	0	1
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	2.2	0.9465
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	4.0	0.8995
					Lus10031595 [exp]	5.1	0.8667
AT2G41480			Peroxidase superfamily protein...		Lus10020826 [exp]	6.5	0.9181
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10040037 [exp]	7.3	0.8951
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012479 [exp]	9.5	0.9088
AT4G16260			Glycosyl hydrolase superfamily...		Lus10037749 [exp]	10.9	0.9025
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	12.2	0.9174
AT4G16260			Glycosyl hydrolase superfamily...		Lus10016883 [exp]	12.2	0.9102
AT5G62750			unknown protein		Lus10004267 [exp]	14.0	0.8854

Compare expression of checked genes

Lus10034036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.