Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19140 389 / 3e-139 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2) AT5G43830 211 / 2e-68 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G22850 200 / 3e-64 Aluminium induced protein with YGL and LRDR motifs (.1) AT4G27450 187 / 2e-59 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 186 / 5e-59 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT5G65010 57 / 2e-09 ASN2 asparagine synthetase 2 (.1.2) AT5G10240 56 / 7e-09 ASN3 asparagine synthetase 3 (.1.2) AT3G47340 50 / 4e-07 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010505 [exp] 457 / 6e-166 AT5G19140 392 / 4e-140 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10041181 [exp] 207 / 4e-67 AT5G43830 369 / 1e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10006624 [exp] 204 / 9e-66 AT5G43830 374 / 2e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10039382 [exp] 202 / 4e-65 AT5G43830 372 / 6e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034883 [exp] 187 / 4e-59 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10033418 [exp] 185 / 3e-58 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10018484 [exp] 179 / 1e-55 AT4G27450 305 / 3e-105 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10011191 [exp] 172 / 3e-53 AT4G27450 303 / 2e-104 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10021899 [exp] 79 / 1e-16 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203400 [exp] 419 / 7e-151 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2) Potri.008G158400 [exp] 216 / 9e-71 AT5G43830 388 / 3e-138 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.010G081600 [exp] 214 / 5e-70 AT5G43830 391 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G049900 [exp] 182 / 3e-57 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G122100 [exp] 181 / 5e-57 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 181 / 8e-57 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.004G040600 [exp] 177 / 2e-55 AT4G27450 366 / 2e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.009G072900 [exp] 54 / 2e-08 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 52 / 1e-07 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF12481 [flax] [poplar] DUF3700 Aluminium induced protein
Representative CDS sequence Show only first row Show all	>Lus10034038 pacid=23154662 polypeptide=Lus10034038 locus=Lus10034038.g ID=Lus10034038.BGIv1.0 annot-version=v1.0 ATGTTGGGAGTCTTCAGCAGCACGATCATGTCCCCGCCGGACGAGCTGGTGGCAGCCGGTAGCAGGACTCCGTCTCCGAAGATGACGTCAGACTCTCTGG TGAATAGGTTCCTCGGCGCCAACTCCTCCGCCGTTTCGGTTCAGGTCGGAGACAACGCTCATCTGGCTTACTCTCACTCAAACCAGTCGCTCCTTCTTCC CAGATCGTTCGCGGTGAAGGATGAGATATTCTGCTTGTTCGAGGGGGCTCTGGACAACTTGGGAAGCCTGAGGCAGCAGTACGGGCTAGCGAAATCGGCG AACGAGGTGGTGCTTGTGATCGAGGCTTATAAGGCGCTTCGTGACAGGGCACCTTACCCTGCTAATCATGTTGTTGGCCACCTCAGTGGGAGCTTTGCTT TCATCGTATTTGACAAGTCCACCTCCACCTTATTCGTTGCTTCTGATCAATTCGGGAAGGTGCCACTGTACTGGGGAATCACAGCTGACGGGTACGTGGC GTTTGCTGATGATGCCGAGCTGCTGAAAGGTGCCTGTGGCAAGTCCCTCGCTTCTTTCCCTCAAGGATGCTTTTTCTCGACTGCGGTTGGTGAGCTGAGG AGCTTCGAGAATCCAAAGAACAAGATCACTGCTGTTCCTGCCAAAGAAGAGGAGATGTGGGGTGCAACCTTTAAGGTATCAACTAAATAG
AA sequence Show only first row Show all	>Lus10034038 pacid=23154662 polypeptide=Lus10034038 locus=Lus10034038.g ID=Lus10034038.BGIv1.0 annot-version=v1.0 MLGVFSSTIMSPPDELVAAGSRTPSPKMTSDSLVNRFLGANSSAVSVQVGDNAHLAYSHSNQSLLLPRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSA NEVVLVIEAYKALRDRAPYPANHVVGHLSGSFAFIVFDKSTSTLFVASDQFGKVPLYWGITADGYVAFADDAELLKGACGKSLASFPQGCFFSTAVGELR SFENPKNKITAVPAKEEEMWGATFKVSTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10034038 [exp]	0	1
AT3G50845			Protein of unknown function (D...		Lus10026019 [exp]	3.0	0.9718
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	3.5	0.9797
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	5.5	0.9781
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	5.9	0.9753
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10040698 [exp]	6.9	0.9681
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	8.3	0.9771
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	9.4	0.9771
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	11.2	0.9743
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029759 [exp]	11.3	0.9719
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10038515 [exp]	11.4	0.9698

Compare expression of checked genes

Lus10034038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.